Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
暂无分享,去创建一个
Christine L. Sun | Rodolphe Barrangou | Jillian F Banfield | Brian C Thomas | J. Banfield | R. Barrangou | Christine L Sun | B. Thomas | B. Thomas
[1] C. Nusbaum,et al. Quality scores and SNP detection in sequencing-by-synthesis systems. , 2008, Genome research.
[2] Christine L. Sun,et al. Phage mutations in response to CRISPR diversification in a bacterial population. , 2013, Environmental microbiology.
[3] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[4] Vincent J. Denef,et al. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria , 2007, Nature.
[5] Chase L. Beisel,et al. Programmable Removal of Bacterial Strains by Use of Genome-Targeting CRISPR-Cas Systems , 2014, mBio.
[6] J. Banfield,et al. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. , 2007, Environmental microbiology.
[7] Christine L. Sun,et al. Strong bias in the bacterial CRISPR elements that confer immunity to phage , 2013, Nature Communications.
[8] Rodolphe Barrangou,et al. The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR–Mediated Immunity , 2013, PLoS genetics.
[9] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[10] Albert J R Heck,et al. RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions , 2011, Proceedings of the National Academy of Sciences.
[11] Stan J. J. Brouns,et al. Evolution and classification of the CRISPR–Cas systems , 2011, Nature Reviews Microbiology.
[12] Stan J. J. Brouns,et al. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. , 2012, Annual review of genetics.
[13] R. Barrangou,et al. Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results , 2013, Journal of Clinical Microbiology.
[14] Jillian F. Banfield,et al. Community genomics in microbial ecology and evolution , 2005, Nature Reviews Microbiology.
[15] R. Barrangou,et al. CRISPR/Cas, the Immune System of Bacteria and Archaea , 2010, Science.
[16] Eric S. Lander,et al. An SNP map of the human genome generated by reduced representation shotgun sequencing , 2000, Nature.
[17] Rodolphe Barrangou,et al. CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity. , 2014, Molecular cell.
[18] Philippe Horvath,et al. Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus , 2007, Journal of bacteriology.
[19] J. Oost,et al. Unravelling the structural and mechanistic basis of CRISPR–Cas systems , 2014, Nature Reviews Microbiology.
[20] Konstantin Severinov,et al. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence , 2011, Proceedings of the National Academy of Sciences.
[21] M. Bateson,et al. Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples , 2010, Applied and Environmental Microbiology.
[22] Philippe Horvath,et al. Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus , 2007, Journal of bacteriology.
[23] H. Brüssow,et al. Phage-Host Interaction: an Ecological Perspective , 2004, Journal of bacteriology.
[24] Vincent J. Denef,et al. In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids , 2012, Science.
[25] Jillian F. Banfield,et al. Genome dynamics in a natural archaeal population , 2007, Proceedings of the National Academy of Sciences.
[26] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[27] Melissa Ly,et al. Association between living environment and human oral viral ecology , 2013, The ISME Journal.
[28] J. García-Martínez,et al. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. , 2009, Microbiology.
[29] Christine L. Sun,et al. Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid Mine Drainage Biofilms , 2009, Applied and Environmental Microbiology.
[30] Vincent J. Denef,et al. Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation , 2008, PLoS biology.
[31] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[32] N. L. Held,et al. Reassortment of CRISPR repeat-spacer loci in Sulfolobus islandicus. , 2013, Environmental microbiology.
[33] Christine L. Sun,et al. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. , 2011, Genome research.
[34] Vincent J. Denef,et al. Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities , 2010, Proceedings of the National Academy of Sciences.
[35] Anders F. Andersson,et al. Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities , 2008, Science.
[36] Rotem Sorek,et al. CRISPR-mediated adaptive immune systems in bacteria and archaea. , 2013, Annual review of biochemistry.
[37] S. Abedon,et al. Bacteriophage host range and bacterial resistance. , 2010, Advances in applied microbiology.
[38] Rodolphe Barrangou,et al. Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars of Salmonella enterica subsp. enterica , 2011, Applied and Environmental Microbiology.
[39] Mattias Jakobsson,et al. In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids , 2022 .
[40] Susan M. Huse,et al. Accuracy and quality of massively parallel DNA pyrosequencing , 2007, Genome Biology.
[41] Peter C. Fineran,et al. Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands , 2013, PLoS genetics.
[42] Peter C. Fineran,et al. CRISPR–Cas systems: beyond adaptive immunity , 2014, Nature Reviews Microbiology.