Structure and mutation analysis of archaeal geranylgeranyl reductase.
暂无分享,去创建一个
Masahiro Fujihashi | Kunio Miki | Tohru Yoshimura | Hisashi Hemmi | Daisuke Sasaki | H. Hemmi | K. Miki | M. Fujihashi | T. Yoshimura | Yuki Iwata | Motomichi Murakami | D. Sasaki | Y. Iwata | Motomichi Murakami
[1] C. Woese,et al. Phylogenetic structure of the prokaryotic domain: The primary kingdoms , 1977, Proceedings of the National Academy of Sciences of the United States of America.
[2] G. Schulz,et al. The structure of the flavoenzyme glutathione reductase , 1978, Nature.
[3] W. Hol,et al. Crystal structure of p-hydroxybenzoate hydroxylase. , 1979, Journal of molecular biology.
[4] Fujii Hiroshi,et al. Efficient enzymatic hydrolysis of polyprenyl pyrophosphates. , 1982, Biochimica et biophysica acta.
[5] A. Gliozzi,et al. Structure, Biosynthesis, and Physicochemical Properties of Archaebacterial Lipids , 1986, Microbiological reviews.
[6] G Vriend,et al. Crystal structure of the p-hydroxybenzoate hydroxylase-substrate complex refined at 1.9 A resolution. Analysis of the enzyme-substrate and enzyme-product complexes. , 1989, Journal of molecular biology.
[7] C. Poulter,et al. (S)-geranylgeranylglyceryl phosphate synthase. Purification and characterization of the first pathway-specific enzyme in archaebacterial membrane lipid biosynthesis. , 1993, The Journal of biological chemistry.
[8] Collaborative Computational,et al. The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.
[9] T. Nishino,et al. Archaebacterial ether-linked lipid biosynthetic gene. Expression cloning, sequencing, and characterization of geranylgeranyl-diphosphate synthase. , 1994, The Journal of biological chemistry.
[10] J. P. Allen,et al. Molecular genetic analysis of terminal steps in bacteriochlorophyll a biosynthesis: characterization of a Rhodobacter capsulatus strain that synthesizes geranylgeraniol-esterified bacteriochlorophyll a. , 1994, Biochemistry.
[11] C. Sander,et al. Dali: a network tool for protein structure comparison. , 1995, Trends in biochemical sciences.
[12] T. Nishino,et al. Conversion of Product Specificity of Archaebacterial Geranylgeranyl-diphosphate Synthase , 1996, The Journal of Biological Chemistry.
[13] C. Hunter,et al. Cloning, sequencing and functional assignment of the chlorophyll biosynthesis gene, chlP, of Synechocystis sp. PCC 6803 , 1996, FEBS letters.
[14] Z. Otwinowski,et al. [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.
[15] A. Vagin,et al. MOLREP: an Automated Program for Molecular Replacement , 1997 .
[16] T. Nishino,et al. A Pathway Where Polyprenyl Diphosphate Elongates in Prenyltransferase , 1998, The Journal of Biological Chemistry.
[17] H. Edelsbrunner,et al. Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design , 1998, Protein science : a publication of the Protein Society.
[18] B. Camara,et al. Metabolic compartmentation of plastid prenyllipid biosynthesis , 1998 .
[19] Kenneth H. Nealson,et al. Structure and mechanism of the flavocytochrome c fumarate reductase of Shewanella putrefaciens MR-1 , 1999, Nature Structural Biology.
[20] Manfred Auer,et al. Structure of fumarate reductase from Wolinella succinogenes at 2.2 Å resolution , 1999, Nature.
[21] C. Hunter,et al. Physical Mapping and Functional Assignment of the Geranylgeranyl-Bacteriochlorophyll Reductase Gene, bchP, of Rhodobacter sphaeroides , 1999, Journal of bacteriology.
[22] Oster,et al. Reduced activity of geranylgeranyl reductase leads to loss of chlorophyll and tocopherol and to partially geranylgeranylated chlorophyll in transgenic tobacco plants expressing antisense RNA for geranylgeranyl reductase , 1999, Plant physiology.
[23] F. S. Mathews,et al. Monomeric sarcosine oxidase: structure of a covalently flavinylated amine oxidizing enzyme. , 1999, Structure.
[24] F. S. Mathews,et al. Monomeric Sarcosine Oxidase: 1. Flavin Reactivity and Active Site Binding Determinants†,‡ , 2000 .
[25] C. Hunter,et al. Rhodospirillum rubrum Possesses a Variant of the bchP Gene, Encoding Geranylgeranyl-Bacteriopheophytin Reductase , 2002, Journal of bacteriology.
[26] D. Gatti,et al. Protein and ligand dynamics in 4-hydroxybenzoate hydroxylase , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[27] P. Dorrestein,et al. Structural and mechanistic studies on ThiO, a glycine oxidase essential for thiamin biosynthesis in Bacillus subtilis. , 2003, Biochemistry.
[28] C. Enroth. High-resolution structure of phenol hydroxylase and correction of sequence errors. , 2003, Acta crystallographica. Section D, Biological crystallography.
[29] T. Oshima,et al. Purification and characterization of geranylgeranylglyceryl phosphate synthase from a thermoacidophilic archaeon, Thermoplasma acidophilum. , 2003, Journal of biochemistry.
[30] H. Komori,et al. DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. , 2004, Acta crystallographica. Section D, Biological crystallography.
[31] Fei Long,et al. REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use. , 2004, Acta crystallographica. Section D, Biological crystallography.
[32] T. Nishino,et al. (S)-2,3-Di-O-geranylgeranylglyceryl Phosphate Synthase from the Thermoacidophilic Archaeon Sulfolobus solfataricus , 2004, Journal of Biological Chemistry.
[33] C. Chou,et al. Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima and Mechanism of Product Chain Length Determination* , 2004, Journal of Biological Chemistry.
[34] C. Chou,et al. A molecular ruler for chain elongation catalyzed by octaprenyl pyrophosphate synthase and its structure-based engineering to produce unprecedented long chain trans-prenyl products. , 2004, Biochemistry.
[35] Haruo Suzuki,et al. Crystal structure of heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96. , 2005, Biochemical and biophysical research communications.
[36] H. Sakuraba,et al. Crystal Structure of a Novel FAD-, FMN-, and ATP-containing l-Proline Dehydrogenase Complex from Pyrococcus horikoshii* , 2005, Journal of Biological Chemistry.
[37] D. Gatti,et al. Removal of a methyl group causes global changes in p-hydroxybenzoate hydroxylase. , 2005, Biochemistry.
[38] J. Naismith,et al. Tryptophan 7-Halogenase (PrnA) Structure Suggests a Mechanism for Regioselective Chlorination , 2005, Science.
[39] B. Entsch,et al. Dynamics involved in catalysis by single-component and two-component flavin-dependent aromatic hydroxylases. , 2005, Biochemical and biophysical research communications.
[40] G. Schulz,et al. Structure and reaction geometry of geranylgeranyl diphosphate synthase from Sinapis alba. , 2006, Biochemistry.
[41] A. H. Wang,et al. Crystal Structure of Type-III Geranylgeranyl Pyrophosphate Synthase from Saccharomyces cerevisiae and the Mechanism of Product Chain Length Determination* , 2006, Journal of Biological Chemistry.
[42] H. Yamaguchi,et al. Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni has a large tunnel for substrate and oxygen access to the active site. , 2006, Journal of molecular biology.
[43] Udo Oppermann,et al. The Crystal Structure of Human Geranylgeranyl Pyrophosphate Synthase Reveals a Novel Hexameric Arrangement and Inhibitory Product Binding* , 2006, Journal of Biological Chemistry.
[44] E. Pai,et al. The Crystal Structure of (S)-3-O-Geranylgeranylglyceryl Phosphate Synthase Reveals an Ancient Fold for an Ancient Enzyme* , 2006, Journal of Biological Chemistry.
[45] T. Eguchi,et al. Biosynthesis of archaeal membrane lipids: digeranylgeranylglycerophospholipid reductase of the thermoacidophilic archaeon Thermoplasma acidophilum. , 2006, Journal of biochemistry.
[46] F. S. Mathews,et al. Heterotetrameric sarcosine oxidase: structure of a diflavin metalloenzyme at 1.85 A resolution. , 2006, Journal of molecular biology.
[47] Gunter Schneider,et al. Crystal structures of two aromatic hydroxylases involved in the early tailoring steps of angucycline biosynthesis. , 2007, Journal of molecular biology.
[48] T. Eguchi,et al. Stereochemistry of reduction in digeranylgeranylglycerophospholipid reductase involved in the biosynthesis of archaeal membrane lipids from Thermoplasma acidophilum. , 2007, Bioorganic chemistry.
[49] E. Oldfield,et al. Bisphosphonates target multiple sites in both cis- and trans-prenyltransferases , 2007, Proceedings of the National Academy of Sciences.
[50] C. Walsh,et al. Chlorination by a long-lived intermediate in the mechanism of flavin-dependent halogenases. , 2007, Biochemistry.
[51] S. Elliott,et al. Crystallographic trapping in the rebeccamycin biosynthetic enzyme RebC , 2007, Proceedings of the National Academy of Sciences.
[52] T. Nishino,et al. Geranylgeranyl reductase involved in the biosynthesis of archaeal membrane lipids in the hyperthermophilic archaeon Archaeoglobus fulgidus , 2007, The FEBS journal.
[53] Jack Snoeyink,et al. Nucleic Acids Research Advance Access published April 22, 2007 MolProbity: all-atom contacts and structure validation for proteins and nucleic acids , 2007 .
[54] H. Hemmi,et al. Specific Partial Reduction of Geranylgeranyl Diphosphate by an Enzyme from the Thermoacidophilic Archaeon Sulfolobus acidocaldarius Yields a Reactive Prenyl Donor, Not a Dead-End Product , 2008, Journal of bacteriology.
[55] Serge X. Cohen,et al. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 , 2008, Nature Protocols.
[56] S. Gamage,et al. Crystal structure of the pyocyanin biosynthetic protein PhzS. , 2008, Biochemistry.
[57] D. Bryant,et al. Identification of the bchP Gene, Encoding Geranylgeranyl Reductase in Chlorobaculum tepidum , 2007, Journal of bacteriology.
[58] G. Schulz,et al. Structure of 2,6-dihydroxypyridine 3-hydroxylase from a nicotine-degrading pathway. , 2008, Journal of molecular biology.
[59] E. Oldfield,et al. Structures of a potent phenylalkyl bisphosphonate inhibitor bound to farnesyl and geranylgeranyl diphosphate synthases , 2008, Proteins.
[60] J. Rohr,et al. Crystal structure of Baeyer-Villiger monooxygenase MtmOIV, the key enzyme of the mithramycin biosynthetic pathway . , 2009, Biochemistry.
[61] Ting-Kai Chang,et al. Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation. , 2009, Journal of the American Chemical Society.
[62] G. Schulz,et al. Structure and action of the myxobacterial chondrochloren halogenase CndH: a new variant of FAD-dependent halogenases. , 2009, Journal of molecular biology.
[63] S. Kimura,et al. Redox control of protein conformation in flavoproteins. , 2009, Antioxidants & redox signaling.
[64] T. Begley,et al. Structure of the PLP degradative enzyme 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti MAFF303099 and its mechanistic implications. , 2009, Biochemistry.
[65] G. Schneider,et al. Structural basis for substrate recognition and specificity in aklavinone-11-hydroxylase from rhodomycin biosynthesis. , 2009, Journal of molecular biology.
[66] Xiaofeng Zhu,et al. Structural insights into regioselectivity in the enzymatic chlorination of tryptophan. , 2009, Journal of molecular biology.
[67] Zhi-Wei Chen,et al. Structural characterization of mutations at the oxygen activation site in monomeric sarcosine oxidase . , 2010, Biochemistry.
[68] Z. Jia,et al. Chloramphenicol biosynthesis: the structure of CmlS, a flavin-dependent halogenase showing a covalent flavin-aspartate bond. , 2010, Journal of molecular biology.
[69] P. Emsley,et al. Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.
[70] Mitchell D. Miller,et al. Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids. , 2010, Journal of molecular biology.