Gene Expression Nervous System Atlas (GENSAT)

understanding of the molecular mechanisms that contribute to the formation and function of the brain must include information about the precise distributions of specific genes and proteins throughout development , and the ability to identify, visualize and genetically manipulate each of the major central nervous system (CNS) cell types. The aims of the GENSAT project are to use results from a variety of studies to identify and map the expression of ∼5,000 of the most important CNS-expressed genes throughout development , to create a characterized library of bacterial artificial chromosome (BAC) clones that provide genetic access to each of the major cell populations in the mammalian brain, and to establish a collection of BAC transgenic mouse lines carrying fluorescent reporter genes that allow further anatomical and physiological studies of these cells. The large chromosomal segments carried in the BACs ensure that reproducible expression is retained for most genes after integration into the mouse genome. The GENSAT project is the first large-scale effort to combine in situ hybridization and BAC transgenic methods to create an atlas of gene expression in the mammalian brain, while improving genetic access to all classes of CNS cells. The project uses two approaches to gene-expression mapping. First, a high-throughput isotopic in situ hybridization prescreen for gene expression is done to map the expression of over 1,000 genes per year on sections from developing and adult mouse brain (at St. Jude Children's Research Hospital, Memphis, Tennessee under the supervision of T. Curran, S. Magdaleno and P. Jensen). The genes analyzed as part of the prescreen are chosen by advisory committees representing a broad spectrum of the neuroscience community, by project sponsors at the National Institute of Neurological Disorders and Stroke (NINDS) and by the GENSAT investigators. was accompanied by online publication of data collected from the BAC transgenic reporter genes (www.gensat.org). This site is public, and it is continually updated with detailed expression data from the BAC trans-genic mice and with appropriate technical detail to exploit the expression data for additional genetic studies. The methods used for the in situ hybridization prescreen, the first sets of results from this screen, and visualiza-tion tools for mining the data are currently being prepared for publication and data release. Furthermore, a database is being constructed at the National Center of Biotechnology Information (NCBI) under the direction of M. DiCuccio, S. Kurdin, B. Jones and M. Inata that will incorporate all …