Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys

[1]  C. Darwin.  On the Origin of Species by Means of Natural Selection: Or, The Preservation of Favoured Races in the Struggle for Life , 2019 .

[2]  C. Darwin.  The Origin of Species by Means of Natural Selection, Or, The Preservation of Favoured Races in the Struggle for Life , 2019 .

[3]  M. Arnold,et al.  The strange blood: Natural hybridization in primates , 2011, Evolutionary anthropology.

[4]  P. Gingerich,et al.  New Oligocene primate from Saudi Arabia and the divergence of apes and Old World monkeys , 2010, Nature.

[5]  Philip L. F. Johnson,et al.  A Draft Sequence of the Neandertal Genome , 2010, Science.

[6]  T. Geissmann,et al.  Mitochondrial evidence for multiple radiations in the evolutionary history of small apes , 2010, BMC Evolutionary Biology.

[7]  M. Batzer,et al.  Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. , 2009, Gene.

[8]  L. Kubatko.  Identifying hybridization events in the presence of coalescence via model selection. , 2009, Systematic biology.

[9]  L. Excoffier,et al.  Gene flow and species delimitation. , 2009, Trends in ecology & evolution.

[10]  J. Pamungkas,et al.  Elucidating geological and biological processes underlying the diversification of Sulawesi tarsiers , 2009, Proceedings of the National Academy of Sciences.

[11]  D. Zinner,et al.  Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization? , 2009, BMC Evolutionary Biology.

[12]  Laura Salter Kubatko,et al.  STEM: species tree estimation using maximum likelihood for gene trees under coalescence , 2009, Bioinform..

[13]  M. Arnold,et al.  Is the New Primate Genus Rungwecebus a Baboon? , 2009, PloS one.

[14]  L. Walter,et al.  Retropositional events consolidate the branching order among New World monkey genera. , 2009, Molecular phylogenetics and evolution.

[15]  D. Zinner,et al.  Comparing chromosomal and mitochondrial phylogenies of sportive lemurs (Genus Lepilemur, Primates) , 2008, Chromosome Research.

[16]  W. Hartwig.  The Primate Fossil Record , 2008 .

[17]  N. Ting.  Mitochondrial relationships and divergence dates of the African colobines: evidence of Miocene origins for the living colobus monkeys. , 2008, Journal of human evolution.

[18]  P. Monié,et al.  Cosmogenic nuclide dating of Sahelanthropus tchadensis and Australopithecus bahrelghazali: Mio-Pliocene hominids from Chad , 2008, Proceedings of the National Academy of Sciences.

[19]  L. Walter,et al.  Phylogenetic position of the langur genera Semnopithecus and Trachypithecus among Asian colobines, and genus affiliations of their species groups , 2008, BMC Evolutionary Biology.

[20]  Ya-ping Zhang,et al.  Phylogenetic incongruence between nuclear and mitochondrial markers in the Asian colobines and the evolution of the langurs and leaf monkeys. , 2008, Molecular phylogenetics and evolution.

[21]  L. Singh,et al.  Molecular phylogeny and biogeography of langurs and leaf monkeys of South Asia (Primates: Colobinae). , 2008, Molecular phylogenetics and evolution.

[22]  A. Rambaut,et al.  BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.

[23]  Eldredge Bermingham,et al.  Hybridization in Large-Bodied New World Primates , 2007, Genetics.

[24]  U. Ramakrishnan,et al.  Phylogenetic relationships and morphometric affinities of the Arunachal macaque Macaca munzala, a newly described primate from Arunachal Pradesh, northeastern India. , 2007, Molecular phylogenetics and evolution.

[25]  M. Batzer,et al.  A SINE-based dichotomous key for primate identification. , 2007, Gene.

[26]  Jinchuan Xing,et al.  A mobile element-based evolutionary history of guenons (tribe Cercopithecini) , 2007, BMC Biology.

[27]  K. M. Sefc,et al.  Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization , 2007, BMC Evolutionary Biology.

[28]  M. Batzer,et al.  SINEs of a nearly perfect character. , 2006, Systematic biology.

[29]  A. Meyer,et al.  Natural hybridization in primates: one evolutionary mechanism. , 2006, Zoology.

[30]  S. Pääbo,et al.  The complex evolutionary history of gorillas: insights from genomic data. , 2006, Molecular biology and evolution.

[31]  Alan M. Moses,et al.  Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting , 2006, PLoS genetics.

[32]  Ya-ping Zhang,et al.  Mitochondrial data support an odd-nosed colobine clade. , 2006, Molecular phylogenetics and evolution.

[33]  Eric S. Lander,et al.  Genetic evidence for complex speciation of humans and chimpanzees , 2006, Nature.

[34]  S. Ho,et al.  Relaxed Phylogenetics and Dating with Confidence , 2006, PLoS biology.

[35]  Jinchuan Xing,et al.  A mobile element based phylogeny of Old World monkeys. , 2005, Molecular phylogenetics and evolution.

[36]  K. Miller,et al.  The Phanerozoic Record of Global Sea-Level Change , 2005, Science.

[37]  Liane Gagnier,et al.  Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates. , 2005, Genome research.

[38]  N. Jablonski.  Theropithecus: The Rise and Fall of a Primate Genus , 2005 .

[39]  T. Disotell,et al.  X-chromosomal window into the evolutionary history of the guenons (Primates: Cercopithecini). , 2005, Molecular phylogenetics and evolution.

[40]  Michel Brunet,et al.  New material of the earliest hominid from the Upper Miocene of Chad , 2005, Nature.

[41]  Jinchuan Xing,et al.  Alu insertion loci and platyrrhine primate phylogeny. , 2005, Molecular phylogenetics and evolution.

[42]  C. Noviello,et al.  Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence. , 2005, Journal of human evolution.

[43]  Michael Sorenson,et al.  Is homoplasy or lineage sorting the source of incongruent mtdna and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)? , 2005, Systematic biology.

[44]  K. Katoh,et al.  MAFFT version 5: improvement in accuracy of multiple sequence alignment , 2005, Nucleic acids research.

[45]  Robert K. Jansen,et al.  Automatic annotation of organellar genomes with DOGMA , 2004, Bioinform..

[46]  J. Schmitz,et al.  Primate phylogeny: molecular evidence from retroposons , 2004, Cytogenetic and Genome Research.

[47]  M. Batzer,et al.  Identity by descent and DNA sequence variation of human SINE and LINE elements , 2004, Cytogenetic and Genome Research.

[48]  Michael P. Cummings,et al.  PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .

[49]  J. Schmitz,et al.  Primate jumping genes elucidate strepsirrhine phylogeny. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[50]  O. Seehausen.  Hybridization and adaptive radiation. , 2004, Trends in ecology & evolution.

[51]  Nathan M. Young,et al.  The phylogenetic position of Morotopithecus. , 2004, Journal of human evolution.

[52]  D. J. Funk,et al.  Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA , 2003 .

[53]  M. Batzer,et al.  Alu elements and hominid phylogenetics , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[54]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[55]  David R. Anderson,et al.  Model selection and multimodel inference : a practical information-theoretic approach , 2003 .

[56]  Svante Pääbo,et al.  The mosaic that is our genome , 2003, Nature.

[57]  H. Ellegren,et al.  Y chromosome conserved anchored tagged sequences (YCATS) for the analysis of mammalian male‐specific DNA , 2002, Molecular ecology.

[58]  Ziheng Yang,et al.  Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci. , 2002, Genetics.

[59]  V. Eisenmann,et al.  Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality, Chad , 2002, Nature.

[60]  Jonathan P. Bollback,et al.  Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology , 2001, Science.

[61]  P. Molnar,et al.  Distorted drainage basins as markers of crustal strain east of the Himalaya , 2001 .

[62]  R. Nichols,et al.  Gene trees and species trees are not the same. , 2001, Trends in ecology & evolution.

[63]  N. Barton.  The role of hybridization in evolution , 2001, Molecular ecology.

[64]  J. Schmitz,et al.  SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates. , 2001, Genetics.

[65]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[66]  N Okada,et al.  SINE insertions: powerful tools for molecular systematics. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[67]  M. Goodman,et al.  The place of Callimico goeldii in the Callitrichine phylogenetic tree: evidence from von Willebrand factor gene intron II sequences. , 1999, Molecular phylogenetics and evolution.

[68]  Hidetoshi Shimodaira,et al.  Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference , 1999, Molecular Biology and Evolution.

[69]  N. Jablonski,et al.  Primate evolution — in and out of Africa , 1999, Current Biology.

[70]  H. Philippe,et al.  How good are deep phylogenetic trees? , 1998, Current opinion in genetics & development.

[71]  C. Groves,et al.  Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. , 1998, Molecular phylogenetics and evolution.

[72]  N. Jablonski.  The Natural History of the Doucs and Snub-Nosed Monkeys , 1998 .

[73]  T. Struhsaker.  Colobine monkeys. Their ecology, behaviour and evolution , 1995, International Journal of Primatology.

[74]  J. Oates,et al.  Colobine Monkeys: Their Ecology, Behaviour and Evolution , 1995 .

[75]  B. Benefit.  Theropithecus. The rise and fall of a primate genus , 1995, International Journal of Primatology.

[76]  R. Martin,et al.  The Cambridge encyclopedia of human evolution , 1994 .

[77]  John C. Avise,et al.  Molecular Markers, Natural History and Evolution , 1993, Springer US.

[78]  P. Goodfellow,et al.  Rapid sequence evolution of the mammalian sex-determining gene SRY , 1993, Nature.

[79]  N. Okada.  SINEs , 1992, Current Biology.

[80]  M. Batzer,et al.  A human-specific subfamily of Alu sequences. , 1991, Genomics.

[81]  Sharon M. Swartz,et al.  A theory of human and primate evolution , 1990, International Journal of Primatology.

[82]  H. Kishino,et al.  Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea , 1989, Journal of Molecular Evolution.

[83]  A. Brooks,et al.  Encyclopedia of Human Evolution and Prehistory , 1988 .

[84]  G. Conroy.  Evolutionary history of the primates , 1980, International Journal of Primatology.

[85]  J. Napier,et al.  A Handbook of Living Primates , 1969 .

[86]  H. R. Catchpole,et al.  A Handbook of Living Primates , 1968, The Yale Journal of Biology and Medicine.

[87]  D. Maddison,et al.  Mesquite: a modular system for evolutionary analysis. Version 2.6 , 2009 .

[88]  M. Batzer,et al.  Mobile DNA elements in primate and human evolution. , 2007, American journal of physical anthropology.

[89]  Derrick J. Zwickl.  Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion , 2006 .

[90]  C. Groves,et al.  The Geography of Mammals and Rivers in Mainland Southeast Asia , 2006 .

[91]  B. Benefit.  The Victoriapithecidae, Cercopithecoidea , 2002 .

[92]  J. Kelley.  The hominoid radiation in Asia , 2002 .

[93]  D. Swofford.  PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .

[94]  David Posada,et al.  MODELTEST: testing the model of DNA substitution , 1998, Bioinform..

[95]  C. Groves,et al.  Primate evolution--in and out of Africa. , 1998, Current biology : CB.

[96]  N. Jablonski,et al.  Classification and evolution of Asian colobines. , 1993, Folia primatologica; international journal of primatology.

[97]  M. Leakey.  Theropithecus: Evolution of Theropithecus in the Turkana Basin , 1993 .

[98]  H. Cooke,et al.  Encyclopedia of human evolution and prehistory , 1991 .

[99]  E. Delson,et al.  Cladistic analysis of cercopithecid relationships , 1987 .

[100]  A. Pusey.  Dispersal and philopatry , 1987 .

[101]  E. Delson,et al.  Evolutionary history of the primates , 1979 .

[102]  G. A. Horridge,et al.  Animal species and evolution. , 1964 .