PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas
暂无分享,去创建一个
[1] Fumiko Ohta,et al. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D , 2004, Nature.
[2] Debashish Bhattacharya,et al. Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates. , 2006, Molecular biology and evolution.
[3] Jan-Fang Cheng,et al. Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis. , 2006, Molecular biology and evolution.
[4] Eitan M. Gurari,et al. Introduction to the theory of computation , 1989 .
[5] Uta Bohnebeck,et al. PhyloGena - a user-friendly system for automated phylogenetic annotation of unknown sequences , 2007, Bioinform..
[6] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[7] Sabine Cornelsen,et al. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[8] Debashish Bhattacharya,et al. A molecular timeline for the origin of photosynthetic eukaryotes. , 2004, Molecular biology and evolution.
[9] R. Haselkorn,et al. The hglK gene is required for localization of heterocyst-specific glycolipids in the cyanobacterium Anabaena sp. strain PCC 7120 , 1995, Journal of bacteriology.
[10] A. Weber,et al. The origin and establishment of the plastid in algae and plants. , 2007, Annual review of genetics.
[11] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[12] Sean R. Eddy,et al. ATV: display and manipulation of annotated phylogenetic , 2001, Bioinform..
[13] M. Ishikawa,et al. Mass identification of chloroplast proteins of endosymbiont origin by phylogenetic profiling based on organism-optimized homologous protein groups. , 2005, Genome informatics. International Conference on Genome Informatics.
[14] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[15] Andrei N Lupas,et al. PhyloGenie: automated phylome generation and analysis. , 2004, Nucleic acids research.
[16] Debashish Bhattacharya,et al. Cyanobacterial Contribution to Algal Nuclear Genomes Is Primarily Limited to Plastid Functions , 2006, Current Biology.
[17] Alexandros Stamatakis,et al. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..
[18] C. Fraser,et al. Phylogenomics: Intersection of Evolution and Genomics , 2003, Science.
[19] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[20] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[21] S. Adl,et al. The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists , 2005, The Journal of eukaryotic microbiology.