Dengue Virus Type 3 Adaptive Changes during Epidemics in São Jose de Rio Preto, Brazil, 2006–2007
暂无分享,去创建一个
Adriano Mondini | Christian Julian Villabona-Arenas | Irene Bosch | I. Bosch | A. Mondini | M. Nogueira | Diane Schimitt | Carlos E. Calzavara-Silva | Paolo M. de A Zanotto | Maurício L. Nogueira | C. Villabona-Arenas | Paolo M. de A. Zanotto | C. E. Calzavara-Silva | P. M. de A. Zanotto | Diane Schimitt
[1] Pablo Librado,et al. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data , 2009, Bioinform..
[2] Yoshiyuki Suzuki. Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus. , 2008, Gene.
[3] E. Holmes,et al. Selection-driven evolution of emergent dengue virus. , 2003, Molecular biology and evolution.
[4] P. Garg,et al. Economic burden of dengue infections in India. , 2008, Transactions of the Royal Society of Tropical Medicine and Hygiene.
[5] E. Holmes,et al. Genealogical evidence for positive selection in the nef gene of HIV-1. , 1999, Genetics.
[6] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[7] Eva Harris,et al. Global spread and persistence of dengue. , 2008, Annual review of microbiology.
[8] Christopher H Woelk,et al. Phylogenetic evidence for adaptive evolution of dengue viruses in nature. , 2002, The Journal of general virology.
[9] Wu Zeng,et al. Economic Cost of Dengue in Puerto Rico , 2012, The American journal of tropical medicine and hygiene.
[10] M. Nei. Molecular Evolutionary Genetics , 1987 .
[11] Edward C. Holmes,et al. Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus , 2003, Journal of Virology.
[12] O. Pybus,et al. Bayesian coalescent inference of past population dynamics from molecular sequences. , 2005, Molecular biology and evolution.
[13] Cameron P. Simmons,et al. Current concepts: Dengue , 2012 .
[14] Sergei L. Kosakovsky Pond,et al. HyPhy: hypothesis testing using phylogenies , 2005, Bioinform..
[15] Donald S. Shepard,et al. Economic Impact of Dengue Illness in the Americas , 2011, The American journal of tropical medicine and hygiene.
[16] Francisco Chiaravalloti Neto,et al. Análise espacial da transmissão de dengue em cidade de porte médio do interior paulista , 2005 .
[17] M. Guzmán,et al. The epidemiology of dengue in the americas over the last three decades: a worrisome reality. , 2010, The American journal of tropical medicine and hygiene.
[18] E. Holmes,et al. Molecular evolution of dengue 2 virus in Puerto Rico: positive selection in the viral envelope accompanies clade reintroduction. , 2006, The Journal of general virology.
[19] M. Kimura,et al. The neutral theory of molecular evolution. , 1983, Scientific American.
[20] Edward C. Holmes,et al. High-Resolution Phylogenetic Analysis of Hepatitis C Virus Adaptation and Its Relationship to Disease Progression , 2004, Journal of Virology.
[21] J. Oliver,et al. The general stochastic model of nucleotide substitution. , 1990, Journal of theoretical biology.
[22] A. Rambaut,et al. BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.
[23] Wladimir J Alonso,et al. Spatio-Temporal Tracking and Phylodynamics of an Urban Dengue 3 Outbreak in São Paulo, Brazil , 2009, PLoS neglected tropical diseases.
[24] G. Chang,et al. Comparative analysis of full genomic sequences among different genotypes of dengue virus type 3 , 2008, Virology Journal.
[25] N. Alvis-Guzmán,et al. Burden of Disease and Economic Impact of Dengue and Severe Dengue in Colombia, 2011. , 2012, Value in health regional issues.
[26] Edward C Holmes,et al. Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus. , 2002, Virology.
[27] Defeating dengue: a challenge for a vaccine , 2012, Nature Medicine.
[28] D. Gubler,et al. Dengue and dengue hemorrhagic fever. , 2014 .
[29] Rosanna W. Peeling,et al. Dengue: a continuing global threat , 2010, Nature Reviews Microbiology.
[30] E. Holmes,et al. A reevaluation of the higher taxonomy of viruses based on RNA polymerases , 1996, Journal of virology.
[31] S. Halstead,et al. Epidemiological studies on dengue virus type 3 in Playa municipality, Havana, Cuba, 2001-2002. , 2012, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.
[32] E. Holmes,et al. Molecular epidemiology of dengue virus type 3 in Venezuela. , 2003, The Journal of general virology.
[33] B. Guy,et al. Towards a dengue vaccine: progress to date and remaining challenges. , 2008, Comparative immunology, microbiology and infectious diseases.
[34] J. Garland. The New England Journal of Medicine. , 1961, Canadian Medical Association journal.
[35] Allen G. Rodrigo,et al. Immune-Mediated Positive Selection Drives Human Immunodeficiency Virus Type 1 Molecular Variation and Predicts Disease Duration , 2002, Journal of Virology.
[36] A. Tenório,et al. Simultaneous circulation of genotypes I and III of dengue virus 3 in Colombia , 2008, Virology Journal.
[37] R. Rico-Hesse,et al. Molecular evolution and distribution of dengue viruses type 1 and 2 in nature. , 1990, Virology.
[38] Julio A. Rozas Liras,et al. DnaSP v 5 : a software for comprehensive analysis of DNA polymorphism data , 2009 .
[39] L. Figueiredo,et al. New Genotype of Dengue Type 3 Virus Circulating in Brazil and Colombia Showed a Close Relationship to Old Asian Viruses , 2009, PloS one.
[40] Michael P. Cummings,et al. BEAST (Bayesian Evolutionary Analysis by Sampling Trees) , 2014 .
[41] C. Villabona-Arenas,et al. Phylogeny of dengue virus type 3 circulating in Colombia between 2001 and 2007 , 2009, Tropical medicine & international health : TM & IH.
[42] A. Mistchenko,et al. Genetic analysis of dengue virus type 3 isolated in Buenos Aires, Argentina. , 2008, Virus research.
[43] Saravudh Suvannadabba,et al. Protective efficacy of the recombinant, live-attenuated, CYD tetravalent dengue vaccine in Thai schoolchildren: a randomised, controlled phase 2b trial , 2012, The Lancet.
[44] C. Schein,et al. PCP consensus sequences of flaviviruses: correlating variance with vector competence and disease phenotype. , 2010, Journal of molecular biology.
[45] R. L. Costa,et al. Comparative evolutionary epidemiology of dengue virus serotypes. , 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[46] E. Kroon,et al. Dengue Virus 3 Genotype 1 Associated with Dengue Fever and Dengue Hemorrhagic Fever, Brazil , 2008, Emerging infectious diseases.
[47] A. Galvani,et al. Disability adjusted life years lost to dengue in Brazil , 2009, Tropical medicine & international health : TM & IH.
[48] E. V. D. da Silva,et al. Molecular epidemiology of dengue type 3 virus in Brazil and Paraguay, 2002-2004. , 2006, The American journal of tropical medicine and hygiene.
[49] Sergei L. Kosakovsky Pond,et al. Not so different after all: a comparison of methods for detecting amino acid sites under selection. , 2005, Molecular biology and evolution.
[50] Edward C. Holmes,et al. Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density-Dependent Transmission , 2011, PLoS pathogens.
[51] S. Ho,et al. Relaxed Phylogenetics and Dating with Confidence , 2006, PLoS biology.
[52] Sergei L. Kosakovsky Pond,et al. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments , 2005, Bioinform..
[53] E. Gould,et al. Molecular Epidemiology, Evolution and Dispersal of the Genus Flavivirus , 2002 .
[54] P. Zanotto,et al. Phylogeography and evolutionary history of dengue virus type 3. , 2009, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[55] R. Medronho,et al. [The epidemic of dengue and hemorrhagic dengue fever in the city of Rio de Janeiro, 2001/2002]. , 2004, Revista da Sociedade Brasileira de Medicina Tropical.
[56] E. Holmes,et al. Population dynamics of flaviviruses revealed by molecular phylogenies. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[57] N. Lennon,et al. A phylogenetic analysis using full-length viral genomes of South American dengue serotype 3 in consecutive Venezuelan outbreaks reveals a novel NS5 mutation. , 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[58] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[59] Positive selection sites in the surface genes of dengue virus: phylogenetic analysis of the interserotypic branches of the four serotypes , 2012, Virus Genes.
[60] Patrick Blair,et al. Molecular epidemiology of dengue virus type 3 in Northern South America: 2000--2005. , 2008, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[61] F. Tajima. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.
[62] N M Ferguson,et al. Transmission dynamics and epidemiology of dengue: insights from age-stratified sero-prevalence surveys. , 1999, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[63] Tin Wee Tan,et al. Conservation and Variability of Dengue Virus Proteins: Implications for Vaccine Design , 2008, PLoS neglected tropical diseases.
[64] S. Vong,et al. Cost and disease burden of Dengue in Cambodia , 2010, BMC public health.
[65] E. Holmes,et al. The Evolutionary Dynamics of Human Influenza B Virus , 2008, Journal of Molecular Evolution.
[66] P. Zanotto,et al. Evolutionary history of Dengue virus type 4: insights into genotype phylodynamics. , 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[67] L. Rychlewski,et al. Alphaherpesvirinae and Gammaherpesvirinae glycoprotein L and CMV UL130 originate from chemokines , 2013, Virology Journal.
[68] T. Jukes,et al. The neutral theory of molecular evolution. , 2000, Genetics.
[69] H. Schatzmayr,et al. Dengue virus type 3 in Rio de Janeiro, Brazil. , 2001, Memorias do Instituto Oswaldo Cruz.
[70] Mark J. Schreiber,et al. Genomic Epidemiology of a Dengue Virus Epidemic in Urban Singapore , 2009, Journal of Virology.
[71] S. Halstead,et al. Dengue vaccine development: a 75% solution? , 2012, The Lancet.
[72] D. Maddison,et al. MacClade 4: analysis of phy-logeny and character evolution , 2003 .
[73] Duane J. Gubler,et al. Dengue, Urbanization and Globalization: The Unholy Trinity of the 21st Century , 2011, Tropical medicine and health.
[74] R. Nogueira,et al. First report of multiple lineages of dengue viruses type 1 in Rio de Janeiro, Brazil , 2011, Virology Journal.