The RNA-binding protein Sam68 regulates expression and transcription function of the androgen receptor splice variant AR-V7

Castration-resistant (CR) prostate cancer (PCa) partly arises due to persistence of androgen receptor (AR) transcriptional activity in the absence of cognate ligand. An emerging mechanism underlying the CRPCa phenotype and predicting response to therapy is the expression of the constitutively-active AR-V7 splice variant generated by AR cryptic exon 3b inclusion. Here, we explore the role of the RNA-binding protein (RBP) Sam68 (encoded by KHDRBS1), which is over-expressed in clinical PCa, on AR-V7 expression and transcription function. Using a minigene reporter, we show that Sam68 controls expression of exon 3b resulting in an increase in endogenous AR-V7 mRNA and protein expression in RNA-binding-dependent manner. We identify a novel protein-protein interaction between Sam68 and AR-V7 mediated by a common domain shared with full-length AR, and observe these proteins in the cell nucleoplasm. Using a luciferase reporter, we demonstrate that Sam68 co-activates ligand-independent AR-V7 transcriptional activity in an RNA-binding-independent manner, and controls expression of the endogenous AR-V7-specific gene target UBE2C. Our data suggest that Sam68 has separable effects on the regulation of AR-V7 expression and transcriptional activity, through its RNA-binding capacity. Sam68 and other RBPs may control expression of AR-V7 and other splice variants as well as their downstream functions in CRPCa.

[1]  C. Sette,et al.  Genotoxic stress causes the accumulation of the splicing regulator Sam68 in nuclear foci of transcriptionally active chromatin , 2010, Nucleic acids research.

[2]  D. Bates,et al.  Hallmarks of alternative splicing in cancer , 2014, Oncogene.

[3]  A. Hoffmann,et al.  A c-Rel subdomain responsible for enhanced DNA-binding affinity and selective gene activation. , 2005, Genes & development.

[4]  M. Garcia-Blanco,et al.  Biologic and clinical significance of androgen receptor variants in castration resistant prostate cancer. , 2014, Endocrine-related cancer.

[5]  C. Chalfant,et al.  The RNA-binding protein Sam68 modulates the alternative splicing of Bcl-x , 2007, The Journal of cell biology.

[6]  David J. Elliott,et al.  Alternative splicing and biological heterogeneity in prostate cancer , 2009, Nature Reviews Urology.

[7]  Robert Patro,et al.  Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms , 2013, ArXiv.

[8]  Mike Wilson,et al.  Selection of highly metastatic variants of different human prostatic carcinomas using orthotopic implantation in nude mice. , 1996, Clinical cancer research : an official journal of the American Association for Cancer Research.

[9]  C. Robson,et al.  The RNA‐binding and adaptor protein Sam68 modulates signal‐dependent splicing and transcriptional activity of the androgen receptor , 2008, The Journal of pathology.

[10]  K. Silverstein,et al.  Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant prostate cancer cell lines. , 2013, Cancer research.

[11]  M. Heiner,et al.  Proteomic identification of heterogeneous nuclear ribonucleoprotein L as a novel component of SLM/Sam68 Nuclear Bodies , 2009, BMC Cell Biology.

[12]  K. Page,et al.  The Stargazin-Related Protein γ7 Interacts with the mRNA-Binding Protein Heterogeneous Nuclear Ribonucleoprotein A2 and Regulates the Stability of Specific mRNAs, Including CaV2.2 , 2008, The Journal of Neuroscience.

[13]  Rob Patro,et al.  Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms , 2013, Nature Biotechnology.

[14]  D. Neal,et al.  Control of Human PIRH2 Protein Stability , 2004, Journal of Biological Chemistry.

[15]  Mottet Nicolas,et al.  前立腺癌に関するEAUガイドライン パートII:進行性再発性および性腺摘除抵抗性前立腺癌の治療 , 2011 .

[16]  P. Nelson,et al.  Resistance to CYP17A1 Inhibition with Abiraterone in Castration-Resistant Prostate Cancer: Induction of Steroidogenesis and Androgen Receptor Splice Variants , 2011, Clinical Cancer Research.

[17]  C. Sette,et al.  Expression of a truncated form of the c-Kit tyrosine kinase receptor and activation of Src kinase in human prostatic cancer. , 2004, The American journal of pathology.

[18]  P. Herrlich,et al.  Signal-dependent regulation of splicing via phosphorylation of Sam68 , 2002, Nature.

[19]  H. König,et al.  Signal-Regulated Pre-mRNA Occupancy by the General Splicing Factor U2AF , 2008, PloS one.

[20]  J. Venables,et al.  The tumour-suppressor protein ASPP1 is nuclear in human germ cells and can modulate ratios of CD44 exon V5 spliced isoforms in vivo , 2006, Oncogene.

[21]  Shuifang Zhu,et al.  Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads , 2014, BMC Bioinformatics.

[22]  P. Rajan,et al.  The RNA-binding protein hnRNPA2 regulates β-catenin protein expression and is overexpressed in prostate cancer , 2014, RNA biology.

[23]  C. Ghigna,et al.  Sam68 regulates EMT through alternative splicing–activated nonsense-mediated mRNA decay of the SF2/ASF proto-oncogene , 2010, The Journal of cell biology.

[24]  S. Plymate,et al.  The Link Between Androgen Receptor Splice Variants and Castration-Resistant Prostate Cancer , 2014, Hormones and Cancer.

[25]  Shihua Sun,et al.  Mechanisms of the androgen receptor splicing in prostate cancer cells , 2014, Oncogene.

[26]  F. S. French,et al.  Autologous down-regulation of androgen receptor messenger ribonucleic acid. , 1990, Molecular endocrinology.

[27]  R. Vessella,et al.  Ligand-independent androgen receptor variants derived from splicing of cryptic exons signify hormone-refractory prostate cancer. , 2009, Cancer research.

[28]  R. Vessella,et al.  AR intragenic deletions linked to androgen receptor splice variant expression and activity in models of prostate cancer progression , 2011, Oncogene.

[29]  G. Clowry,et al.  The Tissue-Specific RNA Binding Protein T-STAR Controls Regional Splicing Patterns of Neurexin Pre-mRNAs in the Brain , 2013, PLoS genetics.

[30]  M. Ares,et al.  Context-dependent control of alternative splicing by RNA-binding proteins , 2014, Nature Reviews Genetics.

[31]  C. Robson,et al.  Tip60 Is a Nuclear Hormone Receptor Coactivator* , 1999, The Journal of Biological Chemistry.

[32]  I. Mills,et al.  The androgen receptor induces a distinct transcriptional program in castration-resistant prostate cancer in man. , 2013, Cancer cell.

[33]  W. Isaacs,et al.  Understanding the mechanisms of androgen deprivation resistance in prostate cancer at the molecular level. , 2015, European urology.

[34]  P. Nelson,et al.  Distinct transcriptional programs mediated by the ligand-dependent full-length androgen receptor and its splice variants in castration-resistant prostate cancer. , 2012, Cancer research.

[35]  T. H. van der Kwast,et al.  [EAU guidelines on prostate cancer. Part II: treatment of advanced, relapsing, and castration-resistant prostate cancer]. , 2011, Actas urologicas espanolas.

[36]  T. H. van der Kwast,et al.  EAU guidelines on prostate cancer. Part II: Treatment of advanced, relapsing, and castration-resistant prostate cancer. , 2011, European urology.

[37]  William N. Venables,et al.  Modern Applied Statistics with S , 2010 .

[38]  S. Schwartz,et al.  CWR22: androgen-dependent xenograft model derived from a primary human prostatic carcinoma. , 1994, Cancer research.

[39]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[40]  Benjamin J. Raphael,et al.  The Mutational Landscape of Lethal Castrate Resistant Prostate Cancer , 2016 .

[41]  S. Lye,et al.  Transcriptional Activity of Androgen Receptor Is Modulated by Two RNA Splicing Factors, PSF and p54nrb , 2007, Molecular and Cellular Biology.

[42]  Libing Song,et al.  Sam68 up‐regulation correlates with, and its down‐regulation inhibits, proliferation and tumourigenicity of breast cancer cells , 2010, The Journal of pathology.

[43]  C. Sette,et al.  The RNA-binding protein Sam68 contributes to proliferation and survival of human prostate cancer cells , 2007, Oncogene.

[44]  W. Isaacs,et al.  AR-V7 and resistance to enzalutamide and abiraterone in prostate cancer. , 2014, The New England journal of medicine.

[45]  T. Madl,et al.  Structural Basis for Homodimerization of the Src-associated during Mitosis, 68-kDa Protein (Sam68) Qua1 Domain*♦ , 2010, The Journal of Biological Chemistry.

[46]  D. Tindall,et al.  The cistrome and gene signature of androgen receptor splice variants in castration resistant prostate cancer cells. , 2015, The Journal of urology.

[47]  C. Sander,et al.  Integrative genomic profiling of human prostate cancer. , 2010, Cancer cell.