The Ribosome as a Conveying Thermal Ratchet Machine
暂无分享,去创建一个
[1] Harry F. Noller,et al. Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements , 2014, Cell.
[2] Taekjip Ha,et al. Following movement of the L1 stalk between three functional states in single ribosomes , 2009, Proceedings of the National Academy of Sciences.
[3] Taekjip Ha,et al. Spontaneous intersubunit rotation in single ribosomes. , 2008, Molecular cell.
[4] Harry F Noller,et al. Analysis of structural dynamics in the ribosome by TLS crystallographic refinement. , 2007, Journal of molecular biology.
[5] Harry F Noller,et al. Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome. , 2007, RNA.
[6] Zigurts K. Majumdar,et al. Observation of intersubunit movement of the ribosome in solution using FRET. , 2007, Journal of molecular biology.
[7] Joachim Frank,et al. Structures of modified eEF2·80S ribosome complexes reveal the role of GTP hydrolysis in translocation , 2007, The EMBO journal.
[8] Harry F Noller,et al. Intersubunit movement is required for ribosomal translocation , 2007, Proceedings of the National Academy of Sciences.
[9] Daniel N. Wilson,et al. Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. , 2007, Molecular cell.
[10] Nathan O'Connor,et al. Identification of two distinct hybrid state intermediates on the ribosome. , 2007, Molecular cell.
[11] B. Cooperman,et al. Kinetically competent intermediates in the translocation step of protein synthesis. , 2007, Molecular cell.
[12] Bernard Rees,et al. Structural basis for messenger RNA movement on the ribosome , 2006, Nature.
[13] J. Holton,et al. Structures of the Bacterial Ribosome at 3.5 Å Resolution , 2005, Science.
[14] A. Spirin. The second Sir Hans Krebs Lecture. Informosomes. , 2005, European journal of biochemistry.
[15] A. Spirin. The Ribosome as an RNA-Based Molecular Machine , 2004, RNA biology.
[16] J. Ballesta,et al. Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation , 2004, The EMBO journal.
[17] Scott M Stagg,et al. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy , 2003, Nature Structural Biology.
[18] Joachim Frank,et al. Locking and Unlocking of Ribosomal Motions , 2003, Cell.
[19] V. Ramakrishnan,et al. Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form , 2002, Cell.
[20] A. Spirin. Ribosome as a molecular machine , 2002, FEBS letters.
[21] Frank Schluenzen,et al. High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium , 2001, Cell.
[22] Harry F. Noller,et al. The Path of Messenger RNA through the Ribosome , 2001, Cell.
[23] D. Purich,et al. Enzyme catalysis: a new definition accounting for noncovalent substrate- and product-like states. , 2001, Trends in biochemical sciences.
[24] V. Ramakrishnan,et al. Recognition of Cognate Transfer RNA by the 30S Ribosomal Subunit , 2001, Science.
[25] T. Earnest,et al. Crystal Structure of the Ribosome at 5.5 Å Resolution , 2001, Science.
[26] C. Vonrhein,et al. Structure of the 30S ribosomal subunit , 2000, Nature.
[27] T. Steitz,et al. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.
[28] T. Steitz,et al. The structural basis of ribosome activity in peptide bond synthesis. , 2000, Science.
[29] Joachim Frank,et al. A ratchet-like inter-subunit reorganization of the ribosome during translocation , 2000, Nature.
[30] J. Ballesta,et al. Three‐dimensional cryo‐electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 Å resolution , 2000, The EMBO journal.
[31] J. Frank,et al. Solution Structure of the E. coli 70S Ribosome at 11.5 Å Resolution , 2000, Cell.
[32] Rolf Hilgenfeld,et al. An α to β conformational switch in EF-Tu , 1996 .
[33] S Thirup,et al. Helix unwinding in the effector region of elongation factor EF-Tu-GDP. , 1996, Structure.
[34] J. Nyborg,et al. The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. , 1993, Structure.
[35] R. Hilgenfeld,et al. Crystal structure of active elongation factor Tu reveals major domain rearrangements , 1993, Nature.
[36] A. Spirin,et al. Structural dynamics of translating ribosomes. , 1992, Biochimie.
[37] T. Hunt,et al. Maternal mRNA from clam oocytes can be specifically unmasked in vitro by antisense RNA complementary to the 3'-untranslated region. , 1990, Genes & development.
[38] Harry F. Noller,et al. Intermediate states in the movement of transfer RNA in the ribosome , 1989, Nature.
[39] H. Noller,et al. Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites , 1989, Cell.
[40] H. Noller,et al. Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA , 1988, Nature.
[41] A. Spirin,et al. Translocation makes the ribosome less compact. , 1987, Journal of molecular biology.
[42] Harry F. Noller,et al. Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes , 1986, Cell.
[43] V. Vasiliev,et al. Localization of elongation factor Tu on the ribosome , 1986, FEBS letters.
[44] A. Spirin,et al. Bioenergetics and protein synthesis. , 1982, Biochimica et biophysica acta.
[45] A. Gudkov,et al. Proton nuclear magnetic resonance study of the ribosomal protein L7/L12 in situ , 1982, FEBS letters.
[46] Y. Ovchinnikov,et al. Localization of the elongation factor g on escherichia coli ribosome , 1981, FEBS letters.
[47] A. Spirin,et al. Elongation factor Tu can reduce translation errors in poly(U)-directed cell-free systems. , 1981, Journal of molecular biology.
[48] V. Vasiliev,et al. Specific compact selfpacking of the ribosomal 23 S RNA , 1980, FEBS letters.
[49] V. Koteliansky,et al. Specific selfpacking of the ribosomal 16 S RNA , 1978, FEBS letters.
[50] A. Spirin,et al. Stepwise elongation factor G-promoted elongation of polypeptides on the ribosome without GTP cleavage. , 1976, Journal of molecular biology.
[51] A. Spirin,et al. Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. , 1976, Journal of molecular biology.
[52] A. Spirin,et al. Contribution of the elongation factors to resistance of ribosomes against inhibitors: Comparison of the inhibitor effects on the factor-dependent and factor-free translation systems , 1976 .
[53] A. Spirin,et al. Translocation in ribosomes by attachment—detachment of elongation factor G without GTP cleavage: Evidence from a column‐bound ribosome system , 1975, FEBS letters.
[54] A. Spirin,et al. Ribosomal protein S12 and ‘non‐enzymatic’ translocation , 1974, FEBS letters.
[55] A. Spirin,et al. Interaction of SH‐reagents with the ribosomal 30 S subparticle and ‘non‐enzymatic’ translocation , 1974, FEBS letters.
[56] A. Spirin,et al. A modification of the 30 S ribosomal subparticle is responsible for stimulation of “non‐enzymatic” translocation byp‐chloromercuribenzoate , 1972, FEBS letters.
[57] A. Spirin,et al. Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate. , 1971, FEBS letters.
[58] F. Lipmann. Polypeptide chain elongation in protein biosynthesis. , 1969, Science.
[59] S. Pestka. Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors. , 1969, The Journal of biological chemistry.
[60] S. Pestka. Studies on the formation of transfer ribonucleic acid-ribosome complexes. 3. The formation of peptide bonds by ribosomes in the absence of supernatant enzymes. , 1968, The Journal of biological chemistry.
[61] M. Bretscher. Translocation in Protein Synthesis: A Hybrid Structure Model , 1968, Nature.
[62] J. Gordon,et al. Role of divalent ions in poly U-directed phenylalanine polymerization* , 1967 .
[63] M. Pearson,et al. Dependence on wavelength of photoproduct yields in ultraviolet-irradiated poly U. , 1966, Journal of molecular biology.
[64] A. Spirin,et al. Studies on the structure of ribosomes. 3. Stepwise unfolding of the 50 s particles without loss of ribosomal protein. , 1966, Journal of molecular biology.
[65] A. Spirin,et al. Use of formaldehyde fixation for studies of ribonucleoprotein particles by caesium chloride density-gradient centrifugation. , 1965, Journal of molecular biology.
[66] J. Midgley. The nucleotide base composition of ribonucleic acid from several microbial species , 1962 .
[67] K. Miura. The nucleotide composition of ribonucleic acids of soluble and particle fractions in several species of bacteria. , 1962, Biochimica et biophysica acta.
[68] A. Spirin,et al. On configurations of high-polymer ribonucleic acid macromolecules as revealed by electron microscopy. , 1961, Journal of molecular biology.
[69] J. Monod,et al. Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.
[70] C. Woese. Composition of Various Ribonucleic Acid Fractions from Micro-organisms of Different Deoxyribonucleic Acid Composition , 1961, Nature.
[71] A. Spirin. On macromolecular structure of native high-polymer ribonucleic acid in solution , 1960 .
[72] K. Ellem,et al. Reversible Dissociation of Ribonucleic Acid , 1960, Nature.
[73] M. Takanami. On the molecular weigt of a ribonucleic acid preparation from a ribonucleoprotein complex. , 1960, Biochimica et biophysica acta.
[74] P. Doty,et al. The preparation and physical chemical properties of ribonucleic acid from microsomal particles , 1959 .
[75] A. Spirin,et al. A Correlation between the Compositions of Deoxyribonucleic and Ribonucleic Acids , 1958, Nature.
[76] F. Crick,et al. Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1953, Nature.
[77] E. Chargaff,et al. Nucleotide composition of pentose nucleic acids from yeast and mammalian tissues. , 1950, The Journal of biological chemistry.
[78] E. Chargaff,et al. The separation and quantitative estimation of purines and pyrimidines in minute amounts. , 1948, The Journal of biological chemistry.
[79] Rachid Ait-Haddou,et al. Brownian ratchet models of molecular motors , 2007, Cell Biochemistry and Biophysics.
[80] B Ermentrout,et al. Dynamics of single-motor molecules: the thermal ratchet model. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[81] F. Oosawa,et al. Protein motors and Maxwell's demons: does mechanochemical transduction involve a thermal ratchet? , 1990, Advances in biophysics.
[82] T. Hunt,et al. Control of translation of masked mRNAs in clam oocytes. , 1990, Enzyme.
[83] G. Kramer,et al. Structure, Function, and Genetics of Ribosomes , 1986, Springer Series in Molecular Biology.
[84] Alexander S. Spirin,et al. Self-Organization of Ribosomal RNA , 1986 .
[85] A. Spirin,et al. Structural Dynamics of the Translating Ribosome , 1986 .
[86] A. Spirin. Ribosomal translocation: facts and models. , 1985, Progress in nucleic acid research and molecular biology.
[87] A. Spirin,et al. The use of columns with matrix-bound polyuridylic acid for isolation of translating ribosomes. , 1979, Methods in enzymology.
[88] A. Spirin. Energetics of the ribosome. , 1978, Progress in nucleic acid research and molecular biology.
[89] A. Spirin,et al. [43] “Nonenzymatic” translation , 1974 .
[90] Martynas Yčas,et al. The biological code , 1969 .
[91] A. Spirin. A model of the functioning ribosome: locking and unlocking of the ribosome subparticles. , 1969, Cold Spring Harbor symposia on quantitative biology.
[92] Y. Nishizuka,et al. Comparison of guanosine triphosphate split and polypeptide synthesis with a purified E. coli system. , 1966, Proceedings of the National Academy of Sciences of the United States of America.
[93] A. Spirin,et al. Studies on the structure of ribosomes. II. Stepwise dissociation of protein from ribosomes by caesium chloride and the re-assembly of ribosome-like particles. , 1966, Journal of molecular biology.
[94] A. Spirin,et al. Biological activity of the re-assembled ribosome-like particles. , 1966, Journal of molecular biology.
[95] Y. Nishizuka,et al. The interrelationship between guanosine triphosphatase and amino acid polymerization. , 1966, Archives of biochemistry and biophysics.
[96] M. Nomura,et al. Reconstitution of functionally active ribosomes from inactive subparticles and proteins. , 1966, Proceedings of the National Academy of Sciences of the United States of America.
[97] A. Spirin. Chapter 1 On “Masked” Forms of Messenger Rna in Early Embryogenesis and in Other Differentiating Systems , 1966 .
[98] A. Spirin. Macromolecular structure of ribonucleic acids , 1964 .
[99] A. Spirin. In vitro Formation of Ribosome-Like Particles from CM-Particles and Protein , 1963 .
[100] A. S. Spibin. Some Problems Concerning the Macromolecular Structure of Ribonucleic Acids , 1963 .
[101] C. Levinthal,et al. Gene expression in intergeneric merozygotes. , 1961, Cold Spring Harbor symposia on quantitative biology.
[102] Jacques Monod,et al. On the Regulation of Gene Activity , 1961 .
[103] A. Aronson,et al. Studies of E. coli ribosomal RNA and its degradation products. , 1961, Biophysical journal.
[104] S. Spiegelman. The relation of informational RNA to DNA. , 1961, Cold Spring Harbor symposia on quantitative biology.
[105] J. Montreuil,et al. [The structure of ribonucleic acids]. , 1953, Exposes annuels de biochimie medicale.
[106] E. Chargaff,et al. The composition of the desoxypentose nucleic acids of thymus and spleen. , 1949, The Journal of biological chemistry.
[107] E. Chargaff,et al. Microbial nucleic acids; the desoxypentose nucleic acids of avian tubercle bacilli and yeast. , 1949, The Journal of biological chemistry.
[108] A. Belozersky. ON THE NUCLEOPROTEINS AND POLYNUCLEOTIDES OF CERTAIN BACTERIA , 1947 .
[109] A. Kiesel,et al. Untersuchungen über Protoplasma. V. Über die Nucleinsäure und die Nucleoproteide der Erbsenkeime. , 1934 .