论文信息 - Striped UniFrac: enabling microbiome analysis at unprecedented scale

Striped UniFrac: enabling microbiome analysis at unprecedented scale

Joshua T. Vogelstein1*, Eric Perlman1, Benjamin Falk1, Alex Baden1, William Gray Roncal2, Vikram Chandrashekhar1, Forrest Collman3, Sharmishtaa Seshamani3, Jesse L. Patsolic1, Kunal Lillaney1, Michael Kazhdan1, Robert Hider Jr.2, Derek Pryor2, Jordan Matelsky2, Timothy Gion2, Priya Manavalan2, Brock Wester2, Mark Chevillet4, Eric T. Trautman5, Khaled Khairy5, Eric Bridgeford1, Dean M. Kleissas6, Daniel J. Tward1, Ailey K. Crow7, Brian Hsueh7, Matthew A. Wright7, Michael I. Miller1, Stephen J. Smith3, R. Jacob Vogelstein6, Karl Deisseroth7 and Randal Burns1

[1] Hongzhe Li,et al. Associating microbiome composition with environmental covariates using generalized UniFrac distances , 2012, Bioinform..

[2] Rick L. Stevens,et al. A communal catalogue reveals Earth’s multiscale microbial diversity , 2017, Nature.

[3] Charis M. Thompson. Collect reliable data on embryo selection , 2017, Nature.

[4] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[5] Jose A Navas-Molina,et al. Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns , 2017, mSystems.

[6] Susan Holmes,et al. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[7] Rob Knight,et al. American Gut: an Open Platform for Citizen Science Microbiome Research , 2018, mSystems.

[8] R. Knight,et al. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.

[9] Fengzhu Sun,et al. Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny , 2011, BMC Bioinformatics.

[10] Mingxun Wang,et al. Qiita: rapid, web-enabled microbiome meta-analysis , 2018, Nature Methods.