Brief report Common variation at 6p21.31 ( BAK1 ) influences the risk of chronic lymphocytic leukemia

Weperformedameta-analysisof3genome-wide association studies to identify additional common variants influencing chronic lymphocyticleukemia(CLL)risk.Thediscov-ery phase was composed of genome-wide association study data from 1121 cases and 3745controls.Replicationanalysiswasper-formed in 861 cases and 2033 controls. We identified a novel CLL risk locus at 6p21.33 (rs210142; intronic to the BAK1 gene, BCL2 antagonist killer 1; P (cid:1) 9.47 (cid:2) 10 (cid:3) 16 ). A strong relationship between risk genotype and reduced BAK1 expression was shown in lymphoblastoid cell lines. This finding provides additional support for polygenic inheritance to CLL and provides further in-sightintothebiologicbasisofdiseasedevel- opment.( Blood .2012;120(4):843-846) direct sequencing of polymorphisms

[1]  P. Broderick,et al.  Common genetic variation at 15q25.2 impacts on chronic lymphocytic leukaemia risk , 2011, British journal of haematology.

[2]  Celine M Vachon,et al.  Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL. , 2011, Blood.

[3]  Simon C. Potter,et al.  The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study , 2011, PLoS genetics.

[4]  Kevin M. Brown,et al.  Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32 , 2010, Nature Genetics.

[5]  E. Campo,et al.  Common variants at 2q37.3, 8q24.21, 15q21.3, and 16q24.1 influence chronic lymphocytic leukemia risk , 2010, Nature Genetics.

[6]  S. Kaufmann,et al.  Context-dependent Bcl-2/Bak Interactions Regulate Lymphoid Cell Apoptosis* , 2009, The Journal of Biological Chemistry.

[7]  Guy Pratt,et al.  A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia , 2008, Nature Genetics.

[8]  R. Wilkins Polygenes, risk prediction, and targeted prevention of breast cancer. , 2008, The New England journal of medicine.

[9]  T. Eisen,et al.  Bmc Cancer Identification of Low Penetrance Alleles for Lung Cancer: the Genetic Lung Cancer Predisposition Study (gelcaps) , 2008 .

[10]  D. George,et al.  Hepatic IGFBP1 is a prosurvival factor that binds to BAK, protects the liver from apoptosis, and antagonizes the proapoptotic actions of p53 at mitochondria. , 2007, Genes & development.

[11]  E. Papaemmanuil,et al.  National study of colorectal cancer genetics , 2007, British Journal of Cancer.

[12]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[13]  S. Korsmeyer,et al.  Essential role of BAX,BAK in B cell homeostasis and prevention of autoimmune disease. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[14]  K. Hemminki,et al.  Familial risk of lymphoproliferative tumors in families of patients with chronic lymphocytic leukemia: results from the Swedish Family-Cancer Database. , 2004, Blood.

[15]  G. Packham,et al.  Chronic lymphocytic leukemia : revelations from the B-cell receptor , 2004 .

[16]  S. Thompson,et al.  Quantifying heterogeneity in a meta‐analysis , 2002, Statistics in medicine.

[17]  T J Hamblin,et al.  Unmutated Ig V(H) genes are associated with a more aggressive form of chronic lymphocytic leukemia. , 1999, Blood.

[18]  G. Evan,et al.  Induction of apoptosis by the Bcl-2 homologue Bak , 1995, Nature.

[19]  N. Weiss Geographical variation in the incidence of the leukemias and lymphomas. , 1979, National Cancer Institute monograph.