A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

[1]  J. Walton HC-toxin. , 2020, Phytochemistry.

[2]  R. Oliver,et al.  Genetic diversity and population structure of Ascochyta rabiei from the western Iranian Ilam and Kermanshah provinces using MAT and SSR markers , 2011, Mycological Progress.

[3]  C. Cassa,et al.  Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations , 2011, Bioinform..

[4]  L. Ciuffetti,et al.  Host-selective toxins, Ptr ToxA and Ptr ToxB, as necrotrophic effectors in the Pyrenophora tritici-repentis-wheat interaction. , 2010, The New phytologist.

[5]  J. Stajich,et al.  De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis , 2010, PLoS genetics.

[6]  G. Murray,et al.  Estimating disease losses to the Australian barley industry , 2010, Australasian Plant Pathology.

[7]  B. Howlett,et al.  Spot form of net blotch, caused by Pyrenophora teres f. maculata, is the most prevalent foliar disease of barley in Victoria, Australia , 2010, Australasian Plant Pathology.

[8]  James K. Hane,et al.  Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum , 2009, BMC Bioinformatics.

[9]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[10]  B. McDonald,et al.  SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene , 2009, PLoS pathogens.

[11]  P. D. de Wit,et al.  Fungal effector proteins. , 2009, Annual review of phytopathology.

[12]  B. Howlett,et al.  Epidemiology and control of spot form of net blotch (Pyrenophora teres f. maculata) of barley: a review , 2009 .

[13]  N. Suzuki,et al.  Cytological and electrophoretic karyotyping of the chestnut blight fungus Cryphonectria parasitica. , 2009, Fungal genetics and biology : FG & B.

[14]  T. Friesen,et al.  Host-selective toxins produced by Stagonospora nodorum confer disease susceptibility in adult wheat plants under field conditions , 2009, Theoretical and Applied Genetics.

[15]  T. Friesen,et al.  Development and characterization of expressed sequence tag-derived microsatellite markers for the wheat stem rust fungus Puccinia graminis f. sp. tritici. , 2009, Phytopathology.

[16]  M. Borodovsky,et al.  Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. , 2008, Genome research.

[17]  D. Catcheside,et al.  Characterisation of low molecular weight phytotoxins isolated from Pyrenophora teres , 2008 .

[18]  Nancy F. Hansen,et al.  Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.

[19]  H. Wallwork,et al.  Diagnostic microsatellite markers for the barley net blotch pathogens, Pyrenophora teres f. maculata and Pyrenophora teres f. teres , 2008, Australasian Plant Pathology.

[20]  A. Waterman,et al.  Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping , 2008, BMC Genomics.

[21]  A. Kohler,et al.  Fungi have three tetraspanin families with distinct functions , 2008, BMC Genomics.

[22]  Mikihiro Yamamoto,et al.  Expression profiles of genes encoded by the supernumerary chromosome controlling AM-toxin biosynthesis and pathogenicity in the apple pathotype of Alternaria alternata. , 2007, Molecular plant-microbe interactions : MPMI.

[23]  James K. Hane,et al.  Dothideomycete–Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum[W][OA] , 2007, The Plant Cell Online.

[24]  G. Kema,et al.  Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range. , 2007, Mycologia.

[25]  D. Catcheside,et al.  Proteinaceous Metabolites from Pyrenophora teres Contribute to Symptom Development of Barley Net Blotch. , 2007, Phytopathology.

[26]  T. Friesen,et al.  The Stagonospora nodorum-wheat pathosystem involves multiple proteinaceous host-selective toxins and corresponding host sensitivity genes that interact in an inverse gene-for-gene manner. , 2007, The Plant journal : for cell and molecular biology.

[27]  T. Friesen,et al.  Genetic mapping of Pyrenophora teres f. teres genes conferring avirulence on barley. , 2007, Fungal genetics and biology : FG & B.

[28]  R. Papa,et al.  Phylogeny and evolution of mating-type genes from Pyrenophora teres, the causal agent of barley “net blotch” disease , 2007, Current Genetics.

[29]  Locating proteins in the cell using TargetP, SignalP and related tools , 2007, Nature Protocols.

[30]  S. Brunak,et al.  Locating proteins in the cell using TargetP, SignalP and related tools , 2007, Nature Protocols.

[31]  A. J. Foster,et al.  Ferricrocin synthesis in Magnaporthe grisea and its role in pathogenicity in rice. , 2007, Molecular plant pathology.

[32]  Hua Ling,et al.  Emergence of a new disease as a result of interspecific virulence gene transfer , 2006, Nature Genetics.

[33]  Feng Chen,et al.  OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups , 2005, Nucleic Acids Res..

[34]  P. Horton,et al.  PROTEIN SUBCELLULAR LOCALIZATION PREDICTION WITH WOLF PSORT , 2005 .

[35]  T. Friesen,et al.  A wheat intervarietal genetic linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci , 2005, Theoretical and Applied Genetics.

[36]  Cathryn J. Rehmeyer,et al.  The genome sequence of the rice blast fungus Magnaporthe grisea , 2005, Nature.

[37]  J. Ovesná,et al.  AFLP-based PCR markers that differentiate spot and net forms of Pyrenophora teres , 2005 .

[38]  G. Kema,et al.  A combined amplified fragment length polymorphism and randomly amplified polymorphism DNA genetic kinkage map of Mycosphaerella graminicola, the septoria tritici leaf blotch pathogen of wheat. , 2002, Genetics.

[39]  L. Ciuffetti,et al.  A molecular genetic map and electrophoretic karyotype of the plant pathogenic fungus Cochliobolus sativus. , 2002, Molecular plant-microbe interactions : MPMI.

[40]  P. Crous,et al.  Evidence of recombination between net- and spot-type populations of Pyrenophora teres as determined by RAPD analysis , 2002 .

[41]  H. Giese,et al.  A genetic map of Blumeria graminis based on functional genes, avirulence genes, and molecular markers. , 2002, Fungal genetics and biology : FG & B.

[42]  R. Müller,et al.  Multiple hybrid polyketide synthase/non-ribosomal peptide synthetase gene clusters in the myxobacterium Stigmatella aurantiaca. , 2001, Gene.

[43]  B. Howlett,et al.  Pathogenicity genes of phytopathogenic fungi. , 2001, Molecular plant pathology.

[44]  L. Francl,et al.  Characterization of the ToxB gene from Pyrenophora tritici-repentis. , 2001, Molecular plant-microbe interactions : MPMI.

[45]  M. Daub,et al.  The Photoactivated Cercospora Toxin Cercosporin: Contributions to Plant Disease and Fundamental Biology. , 2000, Annual review of phytopathology.

[46]  Y. Itoh,et al.  Cloning and characterization of a cyclic peptide synthetase gene from Alternaria alternata apple pathotype whose product is involved in AM-toxin synthesis and pathogenicity. , 2000, Molecular plant-microbe interactions : MPMI.

[47]  M. Aragona,et al.  Electrophoretic karyotypes of the phytopathogenic Pyrenophora graminea and P. teres , 2000 .

[48]  H. Schoonbeek,et al.  Fungal transporters involved in efflux of natural toxic compounds and fungicides. , 2000, Fungal genetics and biology : FG & B.

[49]  H. Vanetten,et al.  Visualization of a conditionally dispensable chromosome in the filamentous ascomycete Nectria haematococca by fluorescence in situ hybridization. , 1999, Fungal genetics and biology : FG & B.

[50]  J. Weiland,et al.  Identification of Molecular Genetic Markers in Pyrenophora teres f. teres Associated with Low Virulence on 'Harbin' Barley. , 1999, Phytopathology.

[51]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[52]  M. Farman,et al.  Genome organization of Magnaporthe grisea: integration of genetic maps, clustering of transposable elements and identification of genome duplications and rearrangements , 1997, Theoretical and Applied Genetics.

[53]  J. Nelson QGENE: software for marker-based genomic analysis and breeding , 1997, Molecular Breeding.

[54]  S. Christiansen,et al.  Efficient cloning of ascomycete mating type genes by PCR amplification of the conserved MAT HMG Box. , 1997, Fungal genetics and biology : FG & B.

[55]  J. Walton,et al.  Host-selective toxins: agents of compatibility. , 1996, The Plant cell.

[56]  S. Covert,et al.  A gene for maackiain detoxification from a dispensable chromosome ofNectria haematococca , 1996, Molecular and General Genetics MGG.

[57]  H. Vanetten,et al.  A gene from the fungal plant pathogen Nectria haematococca that encodes the phytoalexin-detoxifying enzyme pisatin demethylase defines a new cytochrome P450 family , 1994, Molecular and General Genetics MGG.

[58]  N. Talbot,et al.  Karyotypic Variation within Clonal Lineages of the Rice Blast Fungus, Magnaporthe grisea , 1993, Applied and environmental microbiology.

[59]  S. Covert,et al.  A fungal gene for antibiotic resistance on a dispensable ("B") chromosome. , 1991, Science.

[60]  A. Tekauz Characterization and distribution of pathogenic variation in Pyrenophora teres f. teres and P. teres f. maculata from western Canada , 1990 .

[61]  M. Daly,et al.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. , 1987, Genomics.

[62]  H H Flor,et al.  Current Status of the Gene-For-Gene Concept , 1971 .

[63]  R. Oliver,et al.  Pyrenophora teres: profile of an increasingly damaging barley pathogen. , 2011, Molecular plant pathology.

[64]  D. Catcheside,et al.  Initial characterisation of phytotoxic proteins isolated from Pyrenophora teres , 2008 .

[65]  Claude-Alain H. Roten,et al.  Theoretical and practical advances in genome halving , 2004 .

[66]  R. Voorrips MapChart: software for the graphical presentation of linkage maps and QTLs. , 2002, The Journal of heredity.

[67]  C. Lottaz,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2001 .

[68]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[69]  G. Benson,et al.  Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.

[70]  Sean R. Eddy,et al.  HMMER User's Guide - Biological sequence analysis using profile hidden Markov models , 1998 .

[71]  Donald E. Mathre,et al.  Compendium of barley diseases , 1997 .

[72]  L. Ciuffetti,et al.  Purification and immunological characterization of toxic components from cultures of Pyrenophora tritici-repentis. , 1995, Molecular plant-microbe interactions : MPMI.

[73]  P. Vos,et al.  AFLP: a new technique for DNA fingerprinting. , 1995, Nucleic acids research.

[74]  B. Steffenson,et al.  Pathotype diversity of Pyrrenophora teres f.teres on barley , 1992 .

[75]  Steven J. M. Jones,et al.  Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .

[76]  Shivashankar H. Nagaraj,et al.  University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite , 2022 .

[77]  Christina A. Cuomo,et al.  Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s) , 2022 .

[78]  R. Dean,et al.  Bmc Evolutionary Biology the Evolutionary History of Cytochrome P450 Genes in Four Filamentous Ascomycetes , 2022 .