Structure of trichodiene synthase from Fusarium sporotrichioides provides mechanistic inferences on the terpene cyclization cascade

The x-ray crystal structure of recombinant trichodiene synthase from Fusarium sporotrichioides has been determined to 2.5-Å resolution, both unliganded and complexed with inorganic pyrophosphate. This reaction product coordinates to three Mg2+ ions near the mouth of the active site cleft. A comparison of the liganded and unliganded structures reveals a ligand-induced conformational change that closes the mouth of the active site cleft. Binding of the substrate farnesyl diphosphate similarly may trigger this conformational change, which would facilitate catalysis by protecting reactive carbocationic intermediates in the cyclization cascade. Trichodiene synthase also shares significant structural similarity with other sesquiterpene synthases despite a lack of significant sequence identity. This similarity indicates divergence from a common ancestor early in the evolution of terpene biosynthesis.

[1]  P. Edwards,et al.  Elucidation of the deficiency in two yeast coenzyme Q mutants. Characterization of the structural gene encoding hexaprenyl pyrophosphate synthetase. , 1990, The Journal of biological chemistry.

[2]  J C Sacchettini,et al.  Regulation of product chain length by isoprenyl diphosphate synthases. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[4]  D. Cane Enzymic formation of sesquiterpenes , 1990 .

[5]  G. Schulz,et al.  Isoprenoid biosynthesis: manifold chemistry catalyzed by similar enzymes. , 1998, Structure.

[6]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[7]  D. Cane,et al.  Pre-steady-state kinetic analysis of the trichodiene synthase reaction pathway. , 1997, Biochemistry.

[8]  D. Cane,et al.  Trichodiene Synthase. Stereochemical Studies of the Cryptic Allylic Diphosphate Isomerase Activity Using an Anomalous Substrate , 1994 .

[9]  G. Chang,et al.  Macromodel—an integrated software system for modeling organic and bioorganic molecules using molecular mechanics , 1990 .

[10]  D. Cane,et al.  Trichodiene synthase. Substrate specificity and inhibition. , 1995, Biochemistry.

[11]  T. Koyama,et al.  Crystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[12]  D. Cane,et al.  [44] Monoterpene and sesquiterpene cyclases , 1985 .

[13]  D. Cane,et al.  Trichodiene biosynthesis and the role of nerolidyl pyrophosphate in the enzymic cyclization of farnesyl pyrophosphate , 1988 .

[14]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[15]  D. Cane,et al.  Trichodiene Synthase. Enzymatic Formation of Multiple Sesquiterpenes by Alteration of the Cyclase Active Site , 1996 .

[16]  J. Noel,et al.  Structural basis for cyclic terpene biosynthesis by tobacco 5-epi-aristolochene synthase. , 1997, Science.

[17]  Crystal Structure of Human Squalene Synthase , 2000, The Journal of Biological Chemistry.

[18]  D. Cane,et al.  Aristolochene synthase: purification, molecular cloning, high-level expression in Escherichia coli, and characterization of the Aspergillus terreus cyclase. , 2000, Archives of biochemistry and biophysics.

[19]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[20]  E A Merritt,et al.  Raster3D Version 2.0. A program for photorealistic molecular graphics. , 1994, Acta crystallographica. Section D, Biological crystallography.

[21]  J. Sacchettini,et al.  Crystal structure of recombinant farnesyl diphosphate synthase at 2.6-A resolution. , 1994, Biochemistry.

[22]  H. Bouwmeester,et al.  Molecular cloning, expression, and characterization of amorpha-4,11-diene synthase, a key enzyme of artemisinin biosynthesis in Artemisia annua L. , 2000, Archives of biochemistry and biophysics.

[23]  D. Cane,et al.  Trichodiene synthase. Probing the role of the highly conserved aspartate-rich region by site-directed mutagenesis. , 1996, Biochemistry.

[24]  K. Sharp,et al.  Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons , 1991, Proteins.

[25]  J. Bohlmann,et al.  Sesquiterpene Synthases from Grand Fir (Abies grandis) , 1998, The Journal of Biological Chemistry.

[26]  D. Cane,et al.  Overproduction of soluble trichodiene synthase from Fusarium sporotrichioides in Escherichia coli. , 1993, Archives of biochemistry and biophysics.

[27]  R. Croteau,et al.  Cloning, expression, and characterization of epi-cedrol synthase, a sesquiterpene cyclase from Artemisia annua L. , 1999, Archives of biochemistry and biophysics.

[28]  D. Cane,et al.  Crystal Structure Determination of Aristolochene Synthase from the Blue Cheese Mold, Penicillium roqueforti * , 2000, The Journal of Biological Chemistry.

[29]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[30]  D. Christianson,et al.  Managing and manipulating carbocations in biology: terpenoid cyclase structure and mechanism. , 1998, Current opinion in structural biology.

[31]  P E Bourne,et al.  Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. , 1998, Protein engineering.

[32]  Shoshana J. Wodak,et al.  The brugel package - toward computer-aided-design of macromolecules , 1988 .

[33]  D. Cane,et al.  Enzymatic Formation of Isochamigrene, a Novel Sesquiterpene, by Alteration of the Aspartate-Rich Region of Trichodiene Synthase , 1996 .

[34]  D. Cane,et al.  Crystal structure of pentalenene synthase: mechanistic insights on terpenoid cyclization reactions in biology. , 1997, Science.

[35]  R. Croteau,et al.  Germacrene C synthase from Lycopersicon esculentum cv. VFNT cherry tomato: cDNA isolation, characterization, and bacterial expression of the multiple product sesquiterpene cyclase. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[36]  D. Cane Isoprenoid biosynthesis. Stereochemistry of the cyclization of allylic pyrophosphates , 1985 .

[37]  D. Cane,et al.  Trichodiene synthase. Identification of active site residues by site-directed mutagenesis. , 1995, Biochemistry.