Microbial production of vitamin B12: a review and future perspectives
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Jie Kang | Huan Fang | Dawei Zhang | Huan Fang | Dawei Zhang | Jie Kang
[1] Harvard Medical School,et al. Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium , 1993, Journal of bacteriology.
[2] J. Crouzet,et al. Biosynthesis of vitamin B12: the multi-enzyme synthesis of precorrin-4 and factor IV. , 1997, Chemistry & biology.
[3] J. Escalante‐Semerena,et al. ABC Transporter for Corrinoids in Halobacterium sp. Strain NRC-1 , 2005, Journal of bacteriology.
[4] T. Bobik,et al. The PduX Enzyme of Salmonella enterica Is an l-Threonine Kinase Used for Coenzyme B12 Synthesis* , 2008, Journal of Biological Chemistry.
[5] C. Walsh,et al. BluB cannibalizes flavin to form the lower ligand of vitamin B12 , 2007, Nature.
[6] R. Pickersgill,et al. An enzyme-trap approach allows isolation of intermediates in cobalamin biosynthesis , 2012, Nature chemical biology.
[7] Sang Yup Lee,et al. One-step fermentative production of poly(lactate-co-glycolate) from carbohydrates in Escherichia coli , 2016, Nature Biotechnology.
[8] Rebekka Biedendieck,et al. Towards a cell factory for vitamin B12 production in Bacillus megaterium: bypassing of the cobalamin riboswitch control elements. , 2014, New biotechnology.
[9] Jeffrey E. Barrick,et al. Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes. , 2004, Nucleic acids research.
[10] Qian Liu,et al. Engineering an iterative polyketide pathway in Escherichia coli results in single-form alkene and alkane overproduction. , 2015, Metabolic engineering.
[11] M. Yamashita,et al. Effects of Expression of hemA and hemB Genes on Production of Porphyrin in Propionibacterium freudenreichii , 2004, Applied and Environmental Microbiology.
[12] Eric D Brown,et al. Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in E. coli. , 2010, Chemistry & biology.
[13] J. Gogarten,et al. Vitamin B12 Synthesis and Salvage Pathways Were Acquired by Horizontal Gene Transfer to the Thermotogales , 2012, Genome biology and evolution.
[14] J. Crouzet,et al. Primary structure, expression in Escherichia coli, and properties of S-adenosyl-L-methionine:uroporphyrinogen III methyltransferase from Bacillus megaterium , 1991, Journal of bacteriology.
[15] A. Serganov,et al. A Decade of Riboswitches , 2013, Cell.
[16] R. Micura,et al. New insights into gene regulation--high-resolution structures of cobalamin riboswitches. , 2013, Angewandte Chemie.
[17] Luke A. Gilbert,et al. CRISPR interference (CRISPRi) for sequence-specific control of gene expression , 2013, Nature Protocols.
[18] W. Xia,et al. Industrial vitamin B12 production by Pseudomonas denitrificans using maltose syrup and corn steep liquor as the cost-effective fermentation substrates , 2015, Bioprocess and Biosystems Engineering.
[19] Stephen S. Fong,et al. Computational approaches to metabolic engineering utilizing systems biology and synthetic biology , 2014, Computational and structural biotechnology journal.
[20] J. Keasling,et al. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids , 2003, Nature Biotechnology.
[21] Y.‐H.P. Zhang,et al. Substrate channeling and enzyme complexes for biotechnological applications. , 2011, Biotechnology advances.
[22] J. Crouzet,et al. Purification, characterization, and molecular cloning of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Methanobacterium ivanovii , 1991, Journal of bacteriology.
[23] I. Rayment,et al. Structural insights into the mechanism of four-coordinate Cob(II)alamin formation in the active site of the Salmonella enterica ATP:Co(I)rrinoid adenosyltransferase enzyme: critical role of residues Phe91 and Trp93. , 2012, Biochemistry.
[24] Tiangang Liu,et al. In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli , 2011, Proceedings of the National Academy of Sciences.
[25] R. Batey,et al. Single-Molecule Conformational Dynamics of a Biologically Functional Hydroxocobalamin Riboswitch , 2014, Journal of the American Chemical Society.
[26] Tiangang Liu,et al. In vitro reconstitution of mevalonate pathway and targeted engineering of farnesene overproduction in Escherichia coli , 2014, Biotechnology and bioengineering.
[27] Pamela A Silver,et al. Designing biological compartmentalization. , 2012, Trends in cell biology.
[28] Y. Zhuang,et al. Improved large-scale production of vitamin B12 by Pseudomonas denitrificans with betaine feeding. , 2008, Bioresource technology.
[29] M. Yamashita,et al. Production of vitamin B12 in genetically engineered Propionibacterium freudenreichii. , 2004, Journal of bioscience and bioengineering.
[30] J. Escalante‐Semerena,et al. Biosynthesis and Use of Cobalamin (B12) , 2008, EcoSal Plus.
[31] Pascale Cossart,et al. Sequestration of a two-component response regulator by a riboswitch-regulated noncoding RNA , 2014, Science.
[32] Gabriel C. Wu,et al. Synthetic protein scaffolds provide modular control over metabolic flux , 2009, Nature Biotechnology.
[33] Daoyi Guo,et al. Metabolic engineering of Escherichia coli for production of fatty acid short-chain esters through combination of the fatty acid and 2-keto acid pathways. , 2014, Metabolic engineering.
[34] G. Stephanopoulos,et al. Tuning genetic control through promoter engineering. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[35] Ryan T Gill,et al. Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides , 2010, Nature Biotechnology.
[36] C. Bauer,et al. Characterization of an aerobic repressor that coordinately regulates bacteriochlorophyll, carotenoid, and light harvesting-II expression in Rhodobacter capsulatus , 1995, Journal of bacteriology.
[37] G. O’Toole,et al. CobD, a Novel Enzyme withl-Threonine-O-3-phosphate Decarboxylase Activity, Is Responsible for the Synthesis of (R)-1-Amino-2-propanol O-2-Phosphate, a Proposed New Intermediate in Cobalamin Biosynthesis inSalmonella typhimurium LT2* , 1998, The Journal of Biological Chemistry.
[38] R. Gunsalus,et al. Expression of the heme biosynthetic pathway genes hemCD, hemH, hemM, and hemA of Escherichia coli. , 1997, FEMS microbiology letters.
[39] D. Jahn,et al. Microbial production of vitamin B12 , 2002, Applied Microbiology and Biotechnology.
[40] D. Jahn,et al. Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of Radical SAM enzymes , 2003, The EMBO journal.
[41] C. Bauer,et al. The tetrapyrrole biosynthetic pathway and its regulation in Rhodobacter capsulatus. , 2010, Advances in experimental medicine and biology.
[42] Hyun Uk Kim,et al. Metabolic engineering of microorganisms: general strategies and drug production. , 2009, Drug discovery today.
[43] C. Thermes,et al. Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. , 1998, The Biochemical journal.
[44] H. Williams,et al. Genetically Engineered Production of 1-Desmethylcobyrinic Acid, 1-Desmethylcobyrinic Acid a,c-Diamide, and Cobyrinic Acid a,c-Diamide in Escherichia coli Implies a Role for CbiD in C-1 Methylation in the Anaerobic Pathway to Cobalamin* , 2005, Journal of Biological Chemistry.
[45] Q. Qi,et al. Engineering Escherichia coli for efficient production of 5-aminolevulinic acid from glucose. , 2011, Metabolic engineering.
[46] Pamela A Silver,et al. Parts plus pipes: synthetic biology approaches to metabolic engineering. , 2012, Metabolic engineering.
[47] G. Ferni,et al. Microbial Production of Vitamin B12 , 1989 .
[48] C. Roessner,et al. Genetically engineered synthesis of precorrin-6x and the complete corrinoid, hydrogenobyrinic acid, an advanced precursor of vitamin B12. , 1994, Chemistry & biology.
[49] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[50] L. Debussche,et al. Purification and characterization of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Pseudomonas denitrificans , 1989, Journal of bacteriology.
[51] J R Roth,et al. Evolution of coenzyme B12 synthesis among enteric bacteria: evidence for loss and reacquisition of a multigene complex. , 1996, Genetics.
[52] S. Al-Karadaghi,et al. The AAA(+) motor complex of subunits CobS and CobT of cobaltochelatase visualized by single particle electron microscopy. , 2009, Journal of structural biology.
[53] S. Beale,et al. Distribution of δ-aminolevulinic acid biosynthetic pathways among phototrophic bacterial groups , 2004, Archives of Microbiology.
[54] H. Shimizu,et al. Flux analysis and metabolomics for systematic metabolic engineering of microorganisms. , 2013, Biotechnology advances.
[55] Maxime Durot,et al. Rapid and reliable DNA assembly via ligase cycling reaction. , 2014, ACS synthetic biology.
[56] M. Taga,et al. Anaerobic 5-Hydroxybenzimidazole Formation from Aminoimidazole Ribotide: An Unanticipated Intersection of Thiamin and Vitamin B₁₂ Biosynthesis. , 2015, Journal of the American Chemical Society.
[57] Christopher A. Voigt,et al. Automated design of synthetic ribosome binding sites to control protein expression , 2016 .
[58] R. Batey,et al. B12 cofactors directly stabilize an mRNA regulatory switch , 2012, Nature.
[59] Andrey A Mironov,et al. Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element. , 2003, RNA.
[60] C. Bauer,et al. Controlling the delicate balance of tetrapyrrole biosynthesis , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[61] Jae Sung Cho,et al. Systems Metabolic Engineering of Escherichia coli. , 2017, EcoSal Plus.
[62] S. Ferguson,et al. d1 haem biogenesis – assessing the roles of three nir gene products , 2009, The FEBS journal.
[63] Jong Myoung Park,et al. Constraints-based genome-scale metabolic simulation for systems metabolic engineering. , 2009, Biotechnology advances.
[64] Shimizu,et al. Improvement of vitamin B(12) fermentation by reducing the inhibitory metabolites by cell recycle system and a mixed culture. , 2000, Biochemical engineering journal.
[65] E. Brody,et al. Salmonella typhimurium cobalamin (vitamin B12) biosynthetic genes: functional studies in S. typhimurium and Escherichia coli , 1996, Journal of bacteriology.
[66] J. Park,et al. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs , 2013, Nature Biotechnology.
[67] G. Cohen. Biosynthesis of cobalamins including vitamin B12 , 2010 .
[68] Brian F. Pfleger,et al. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes , 2006, Nature Biotechnology.
[69] Identification, Characterization, and Structure/Function Analysis of a Corrin Reductase Involved in Adenosylcobalamin Biosynthesis* , 2008, Journal of Biological Chemistry.
[70] J. Escalante‐Semerena. Conversion of Cobinamide into Adenosylcobamide in Bacteria and Archaea , 2007, Journal of bacteriology.
[71] Tae Seok Moon,et al. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. , 2010, Metabolic engineering.
[72] H. Salis. The ribosome binding site calculator. , 2011, Methods in enzymology.
[73] Jian-Zhong Liu,et al. Genome shuffling of Propionibacterium shermanii for improving vitamin B12 production and comparative proteome analysis. , 2010, Journal of biotechnology.
[74] S. Santabarbara,et al. Identification and Characterization of a Novel Vitamin B12 (Cobalamin) Biosynthetic Enzyme (CobZ) from Rhodobacter capsulatus, Containing Flavin, Heme, and Fe-S Cofactors* , 2005, Journal of Biological Chemistry.
[75] S. Moore,et al. The anaerobic biosynthesis of vitamin B12. , 2012, Biochemical Society transactions.
[76] M. Gelfand,et al. Comparative Genomics of the Vitamin B12 Metabolism and Regulation in Prokaryotes* , 2003, Journal of Biological Chemistry.
[77] H. Salis,et al. A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons , 2015, Nucleic acids research.
[78] Farren J. Isaacs,et al. Programming cells by multiplex genome engineering and accelerated evolution , 2009, Nature.
[79] Ping Wang,et al. Metabolic flux analysis of the central carbon metabolism of the industrial vitamin B12 producing strain Pseudomonas denitrificans using 13C-labeled glucose , 2012 .
[80] J. Karty,et al. Vitamin B12 regulates photosystem gene expression via the CrtJ antirepressor AerR in Rhodobacter capsulatus , 2014, Molecular microbiology.
[81] J. Roth,et al. Sinorhizobium meliloti bluB is necessary for production of 5,6-dimethylbenzimidazole, the lower ligand of B12. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[82] J. Duus,et al. Anaerobic chlorophyll isocyclic ring formation in Rhodobacter capsulatus requires a cobalamin cofactor. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[83] Jibin Sun,et al. In Vitro Optimization of Enzymes Involved in Precorrin-2 Synthesis Using Response Surface Methodology , 2016, PloS one.
[84] I. Rayment,et al. Structure and mutational analysis of the archaeal GTP:AdoCbi-P guanylyltransferase (CobY) from Methanocaldococcus jannaschii: insights into GTP binding and dimerization. , 2011, Biochemistry.
[85] D. Jahn,et al. Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium , 2009, Microbial biotechnology.
[86] Anupam Chowdhury,et al. Systems metabolic engineering design: Fatty acid production as an emerging case study , 2014, Biotechnology and bioengineering.
[87] R. Breaker,et al. Gene regulation by riboswitches , 2004, Nature Reviews Molecular Cell Biology.
[88] James C. Liao,et al. Expanding metabolism for biosynthesis of nonnatural alcohols , 2008, Proceedings of the National Academy of Sciences.
[89] Peng Wang,et al. Improved propionic acid and 5,6-dimethylbenzimidazole control strategy for vitamin B12 fermentation by Propionibacterium freudenreichii. , 2015, Journal of biotechnology.
[90] J. Escalante‐Semerena,et al. Reassessment of the Late Steps of Coenzyme B12 Synthesis in Salmonella enterica: Evidence that Dephosphorylation of Adenosylcobalamin-5′-Phosphate by the CobC Phosphatase Is the Last Step of the Pathway , 2007, Journal of bacteriology.
[91] Mauricio Barahona,et al. Tuning the dials of Synthetic Biology , 2013, Microbiology.
[92] Gyoo Yeol Jung,et al. Coenzyme B12 can be produced by engineered Escherichia coli under both anaerobic and aerobic conditions , 2014, Biotechnology journal.
[93] M. Taga,et al. Analysis of substrate specificity in CobT homologs reveals widespread preference for DMB, the lower axial ligand of vitamin B(12). , 2013, Chemistry & biology.
[94] M. Oh,et al. Butyrate production in engineered Escherichia coli with synthetic scaffolds. , 2013, Biotechnology and bioengineering.
[95] N. Chen,et al. Cloning of two 5-aminolevulinic acid synthase isozymes HemA and HemO from Rhodopseudomonas palustris with favorable characteristics for 5-aminolevulinic acid production , 2013, Biotechnology Letters.
[96] Liying Wang,et al. A Mutant HemA Protein with Positive Charge Close to the N Terminus Is Stabilized against Heme-Regulated Proteolysis in Salmonella typhimurium , 1999, Journal of bacteriology.
[97] Xueli Zhang,et al. Metabolic Engineering for Production of Biorenewable Fuels and Chemicals: Contributions of Synthetic Biology , 2010, Journal of biomedicine & biotechnology.
[98] Z. Deng,et al. Metabolic engineering of fatty acyl-ACP reductase-dependent pathway to improve fatty alcohol production in Escherichia coli. , 2014, Metabolic engineering.
[99] B. Atshaves,et al. Overexpression in Escherichia coli of 12 vitamin B12 biosynthetic enzymes. , 1995, Protein expression and purification.
[100] T. Leustek,et al. The role of Saccharomyces cerevisiae Met1p and Met8p in sirohaem and cobalamin biosynthesis. , 1999, The Biochemical journal.
[101] Timothy S. Ham,et al. Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. , 2008, Current opinion in biotechnology.
[102] R. Sigel,et al. Diversity of Cobalamin Riboswitches in the Corrinoid-Producing Organohalide Respirer Desulfitobacterium hafniense , 2013, Journal of bacteriology.