How Widespread is Metabolite Sensing by Ribosome-Arresting Nascent Peptides?
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[1] Pascale Cossart,et al. Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria , 2016, Science.
[2] Daniel N. Wilson,et al. Translation regulation via nascent polypeptide-mediated ribosome stalling. , 2016, Current opinion in structural biology.
[3] H. Taguchi,et al. Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing , 2016, Proceedings of the National Academy of Sciences.
[4] Daniel N. Wilson,et al. Structure of the mammalian antimicrobial peptide Bac7(1–16) bound within the exit tunnel of a bacterial ribosome , 2016, Nucleic acids research.
[5] T. Tuller,et al. A comparative genomics study on the effect of individual amino acids on ribosome stalling , 2015, BMC Genomics.
[6] S. Kojima,et al. Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria , 2015, Proceedings of the National Academy of Sciences.
[7] G. von Heijne,et al. Cotranslational Protein Folding inside the Ribosome Exit Tunnel , 2015, Cell reports.
[8] Daniel N. Wilson,et al. The proline-rich antimicrobial peptide Onc112 inhibits translation by blocking and destabilizing the initiation complex , 2015, Nature Structural &Molecular Biology.
[9] Raktim N. Roy,et al. The Mechanism of Inhibition of Protein Synthesis by the Proline-Rich Peptide Oncocin , 2015, Nature Structural &Molecular Biology.
[10] Jiao Ma,et al. Identification and characterization of sORF-encoded polypeptides , 2015, Critical reviews in biochemistry and molecular biology.
[11] A. Schier,et al. Identifying (non‐)coding RNAs and small peptides: Challenges and opportunities , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.
[12] Daniel N. Wilson,et al. Drug sensing by the ribosome induces translational arrest via active site perturbation. , 2014, Molecular cell.
[13] David W. Schryer,et al. The general mode of translation inhibition by macrolide antibiotics , 2014, Proceedings of the National Academy of Sciences.
[14] R. Beckmann,et al. Molecular basis for the ribosome functioning as an L-tryptophan sensor. , 2014, Cell reports.
[15] Amber R. Davis,et al. Sequence selectivity of macrolide-induced translational attenuation , 2014, Proceedings of the National Academy of Sciences.
[16] P. Emsley,et al. The Structure of the Yeast Mitochondrial Large Ribosomal Subunit , 2014 .
[17] Daniel N. Wilson,et al. Molecular basis for erythromycin-dependent ribosome stalling during translation of the ErmBL leader peptide , 2014, Nature Communications.
[18] Daniel N. Wilson. Ribosome-targeting antibiotics and mechanisms of bacterial resistance , 2013, Nature Reviews Microbiology.
[19] Kirsten Jung,et al. Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P , 2013, Proceedings of the National Academy of Sciences.
[20] Koreaki Ito,et al. Arrest peptides: cis-acting modulators of translation. , 2013, Annual review of biochemistry.
[21] Daniel N. Wilson,et al. Nascent peptides that block protein synthesis in bacteria , 2013, Proceedings of the National Academy of Sciences.
[22] M. Rodnina,et al. EF-P Is Essential for Rapid Synthesis of Proteins Containing Consecutive Proline Residues , 2013, Science.
[23] Daniel N. Wilson,et al. Translation Elongation Factor EF-P Alleviates Ribosome Stalling at Polyproline Stretches , 2013, Science.
[24] Koreaki Ito,et al. Multisite ribosomal stalling: a unique mode of regulatory nascent chain action revealed for MifM. , 2012, Molecular cell.
[25] D. Klepacki,et al. Role of antibiotic ligand in nascent peptide-dependent ribosome stalling , 2011, Proceedings of the National Academy of Sciences.
[26] Daniel N. Wilson,et al. The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling. , 2011, Current opinion in structural biology.
[27] Theresa Braine,et al. Race against time to develop new antibiotics. , 2011, Bulletin of the World Health Organization.
[28] Shashi Bhushan,et al. SecM-Stalled Ribosomes Adopt an Altered Geometry at the Peptidyl Transferase Center , 2011, PLoS biology.
[29] Michele Vendruscolo,et al. Transient tertiary structure formation within the ribosome exit port. , 2010, Journal of the American Chemical Society.
[30] Daniel N. Wilson,et al. Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide. , 2010, Molecular cell.
[31] Vijay S. Pande,et al. Non-Bulk-Like Solvent Behavior in the Ribosome Exit Tunnel , 2010, PLoS Comput. Biol..
[32] J. Cate,et al. Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action , 2010, Proceedings of the National Academy of Sciences.
[33] T. Steitz,et al. Revisiting the structures of several antibiotics bound to the bacterial ribosome , 2010, Proceedings of the National Academy of Sciences.
[34] Marco Gartmann,et al. α-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel , 2010, Nature Structural &Molecular Biology.
[35] Klaus Schulten,et al. Structural Insight into Nascent Polypeptide Chain–Mediated Translational Stalling , 2009, Science.
[36] Daniel N. Wilson. The A–Z of bacterial translation inhibitors , 2009, Critical reviews in biochemistry and molecular biology.
[37] K. Pogliano,et al. A ribosome–nascent chain sensor of membrane protein biogenesis in Bacillus subtilis , 2009, The EMBO journal.
[38] C. J. Woolstenhulme,et al. Genetic Identification of Nascent Peptides That Induce Ribosome Stalling* , 2009, The Journal of Biological Chemistry.
[39] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[40] H. Ramu,et al. Programmed drug‐dependent ribosome stalling , 2009, Molecular microbiology.
[41] Vijay S Pande,et al. Side-chain recognition and gating in the ribosome exit tunnel , 2008, Proceedings of the National Academy of Sciences.
[42] C. Yanofsky,et al. Ribosome Recycling Factor and Release Factor 3 Action Promotes TnaC-Peptidyl-tRNA Dropoff and Relieves Ribosome Stalling during Tryptophan Induction of tna Operon Expression in Escherichia coli , 2007, Journal of bacteriology.
[43] C. Hayes,et al. Prolyl-tRNAPro in the A-site of SecM-arrested Ribosomes Inhibits the Recruitment of Transfer-messenger RNA* , 2006, Journal of Biological Chemistry.
[44] M Gerstein,et al. The geometry of the ribosomal polypeptide exit tunnel. , 2006, Journal of molecular biology.
[45] Koreaki Ito,et al. Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall. , 2006, Molecular cell.
[46] Jianli Lu,et al. Folding zones inside the ribosomal exit tunnel , 2005, Nature Structural &Molecular Biology.
[47] S. Naito,et al. Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis. , 2005, Genes & development.
[48] C. Deutsch,et al. Secondary structure formation of a transmembrane segment in Kv channels. , 2005, Biochemistry.
[49] C. Yanofsky,et al. The mechanism of tryptophan induction of tryptophanase operon expression: Tryptophan inhibits release factor-mediated cleavage of TnaC-peptidyl-tRNAPro , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[50] C. Yanofsky,et al. Reproducing tna Operon Regulation in Vitro in an S-30 System , 2001, The Journal of Biological Chemistry.
[51] Z. Wang,et al. Ribosome stalling is responsible for arginine-specific translational attenuation in Neurospora crassa , 1997, Molecular and cellular biology.
[52] J. Boeke,et al. Small open reading frames: beautiful needles in the haystack. , 1997, Genome research.
[53] D. Morris,et al. The Upstream Open Reading Frame of the mRNA Encoding S-Adenosylmethionine Decarboxylase Is a Polyamine-responsive Translational Control Element* , 1996, The Journal of Biological Chemistry.
[54] J. Hill,et al. Cell-specific translational regulation of S-adenosylmethionine decarboxylase mRNA. Influence of the structure of the 5' transcript leader on regulation by the upstream open reading frame. , 1993, The Journal of biological chemistry.
[55] J. Hill,et al. Cell-specific translational regulation of S-adenosylmethionine decarboxylase mRNA. Dependence on translation and coding capacity of the cis-acting upstream open reading frame. , 1993, The Journal of biological chemistry.
[56] D. Dubnau,et al. Demonstration of erythromycin-dependent stalling of ribosomes on the ermC leader transcript. , 1987, The Journal of biological chemistry.
[57] R. Milligan,et al. Location of exit channel for nascent protein in 80S ribosome , 1986, Nature.
[58] R. Brückner,et al. Regulation of the inducible chloramphenicol acetyltransferase gene of the Staphylococcus aureus plasmid pUB112. , 1985, The EMBO journal.
[59] D. Dubnau,et al. Conformational alteration of mRNA structure and the posttranscriptional regulation of erythromycin-induced drug resistance. , 1980, Nucleic acids research.
[60] S. Horinouchi,et al. Posttranscriptional modification of mRNA conformation: mechanism that regulates erythromycin-induced resistance. , 1980, Proceedings of the National Academy of Sciences of the United States of America.
[61] K. Ito,et al. Secretion monitor, SecM, undergoes self-translation arrest in the cytosol. , 2001, Molecular cell.
[62] L. Gold,et al. Extension inhibition analysis of translation initiation complexes. , 1988, Methods in enzymology.
[63] L. Gold,et al. [27] Extension inhibition analysis of translation initiation complexes☆ , 1988 .
[64] Jun Zhang,et al. Figures and Figure Supplements Mechanisms of Ribosome Stalling by Secm at Multiple Elongation Steps , 2022 .