The genome of Mekong tiger perch (Datnioides undecimradiatus) provides insights into the phylogenetic position of Lobotiformes and biological conservation
暂无分享,去创建一个
Shanshan Liu | Guangyi Fan | Xin Liu | He Zhang | Shuai Sun | Xiao Du | Xiaoyun Huang | Mengqi Zhang | Xiaoning Hong | Yue Wang | Wenhong Zeng | Lei Li | Xin Liu
[1] L. Redd,et al. International Union for Conservation of Nature , 2010, Permanent Missions to the United Nations, No. 309.
[2] Jian Wang,et al. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly , 2019, Genome research.
[3] Huihong Zhao,et al. Characterization of the Complete Mitochondrial Genome Sequences of Three Croakers (Perciformes, Sciaenidae) and Novel Insights into the Phylogenetics , 2018, International journal of molecular sciences.
[4] Nicolás Bellora,et al. Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data , 2018, Proceedings of the National Academy of Sciences.
[5] J. Volff,et al. Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates , 2018, G3: Genes, Genomes, Genetics.
[6] B. Faircloth,et al. Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary , 2018, Nature Ecology & Evolution.
[7] Jian Wang,et al. SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data , 2017, GigaScience.
[8] J. M. Mirande,et al. Combined phylogeny of ray‐finned fishes (Actinopterygii) and the use of morphological characters in large‐scale analyses , 2017, Cladistics : the international journal of the Willi Hennig Society.
[9] Nicolas Bailly,et al. Phylogenetic classification of bony fishes , 2017, BMC Evolutionary Biology.
[10] Sudhir Kumar,et al. TimeTree: A Resource for Timelines, Timetrees, and Divergence Times. , 2017, Molecular biology and evolution.
[11] Shuhua Xu,et al. Adaptation of human skin color in various populations , 2017, Hereditas.
[12] Frank Noé,et al. Major Histocompatibility Complex (MHC) Class I and MHC Class II Proteins: Conformational Plasticity in Antigen Presentation , 2017, Front. Immunol..
[13] Yue Bisong,et al. CpGIScan: An Ultrafast Tool for CpG Islands Identification from Genome Sequence , 2017 .
[14] H. Nezamabadi-pour,et al. Genome-wide analysis of CpG islands in some livestock genomes and their relationship with genomic features , 2016 .
[15] Reinhold Hanel,et al. Evolution of the immune system influences speciation rates in teleost fishes , 2016, Nature Genetics.
[16] N. Weisenfeld,et al. Direct determination of diploid genome sequences , 2016, bioRxiv.
[17] R. Cameron,et al. DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms. , 2016, Methods in molecular biology.
[18] Terry. Grande,et al. Fishes of the World: Nelson/Fishes of the World , 2016 .
[19] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[20] Haibao Tang,et al. jcvi: JCVI utility libraries , 2015 .
[21] O. Kohany,et al. Repbase Update, a database of repetitive elements in eukaryotic genomes , 2015, Mobile DNA.
[22] M. Fiorillo,et al. The multifaceted nature of NLRP12 , 2014, Journal of leukocyte biology.
[23] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[24] Vaishali Katju,et al. Copy-number changes in evolution: rates, fitness effects and adaptive significance , 2013, Front. Genet..
[25] David W. Cheung,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[26] L. Holm,et al. The Pfam protein families database , 2011, Nucleic Acids Res..
[27] Inge Jonassen,et al. The genome sequence of Atlantic cod reveals a unique immune system , 2011, Nature.
[28] R. Durbin,et al. Inference of human population history from individual whole-genome sequences. , 2011, Nature.
[29] R. Durbin,et al. Inference of Human Population History From Whole Genome Sequence of A Single Individual , 2011, Nature.
[30] Joshua M. Stuart,et al. Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. , 2009, The Journal of heredity.
[31] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[32] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[33] Meredith E. Protas,et al. Evolution of coloration patterns. , 2008, Annual review of cell and developmental biology.
[34] Leng Han,et al. CpG island density and its correlations with genomic features in mammalian genomes , 2008, Genome Biology.
[35] Jonathan E. Allen,et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments , 2007, Genome Biology.
[36] Jeffery P. Demuth,et al. Accelerated Rate of Gene Gain and Loss in Primates , 2007, Genetics.
[37] Robert S. Harris. Improved Pairwise Alignmnet of Genomic DNA , 2007 .
[38] Ziheng Yang. PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.
[39] Manfred Schartl,et al. Evolution of pigment synthesis pathways by gene and genome duplication in fish , 2007, BMC Evolutionary Biology.
[40] Zhao Xu,et al. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons , 2007, Nucleic Acids Res..
[41] Burkhard Morgenstern,et al. AUGUSTUS: ab initio prediction of alternative transcripts , 2006, Nucleic Acids Res..
[42] Amos Bairoch,et al. The PROSITE database , 2005, Nucleic Acids Res..
[43] Paramvir S. Dehal,et al. TreeFam: a curated database of phylogenetic trees of animal gene families , 2005, Nucleic Acids Res..
[44] Leszek Rychlewski,et al. FFAS03: a server for profile–profile sequence alignments , 2005, Nucleic Acids Res..
[45] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[46] Sébastien Carrère,et al. The ProDom database of protein domain families: more emphasis on 3D , 2004, Nucleic Acids Res..
[47] Hiroaki Kitano,et al. The PANTHER database of protein families, subfamilies, functions and pathways , 2004, Nucleic Acids Res..
[48] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[49] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[50] S. Wright,et al. Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana. , 2003, Genome research.
[51] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[52] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[53] S. Karlin,et al. Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.
[54] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[55] J. P. Fontenot,et al. Urea, Calcium, Potassium and Sulfur Impregnation of Whole Corn—Development and In Vitro Evaluation , 1985 .
[56] Mosè Manni,et al. BUSCO: Assessing Genome Assembly and Annotation Completeness. , 2019, Methods in molecular biology.
[57] Hartmut Rehbein,et al. Fishery products: quality, safety and authenticity. , 2009 .
[58] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[59] Peer Bork,et al. SMART: identification and annotation of domains from signalling and extracellular protein sequences , 1999, Nucleic Acids Res..