Plant retrotransposons.
暂无分享,去创建一个
[1] V. Chandler,et al. Paramutation and related allelic interactions. , 1997, Trends in genetics : TIG.
[2] I. Arkhipova,et al. Promoting in Tandem: The Promoter for Telomere Transposon HeT-A and Implications for the Evolution of Retroviral LTRs , 1997, Cell.
[3] J. Bennetzen,et al. Structure and coding properties of Bs1, a maize retrovirus-like transposon. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[4] L. Loguercio,et al. Structural analysis of a hmg-coA-reductase pseudogene: insights into evolutionary processes affecting the hmgr gene family in allotetraploid cotton (Gossypium hirsutum L.) , 1998, Current Genetics.
[5] H. Hirochika,et al. Autonomous transposition of the tobacco retrotransposon Tto1 in rice. , 1996, The Plant cell.
[6] M. S. Johnson,et al. The core domain of retrotransposon integrase in Hordeum: predicted structure and evolution. , 1998, Molecular biology and evolution.
[7] J. Brandle,et al. Isolation and characterization of Tnd-1, a retrotransposon marker linked to black root rot resistance in tobacco , 1999, Theoretical and Applied Genetics.
[8] J. Boeke,et al. Transcription and reverse transcription of retrotransposons. , 1989, Annual review of microbiology.
[9] S. Sandmeyer,et al. Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element , 1995, Science.
[10] M. Grandbastien,et al. Activation of the Promoter of the Tnt1 Retrotransposon in Tomato After Inoculation with the Fungal Pathogen Cladosporium fulvum , 1999 .
[11] J. Bennetzen. The structure and evolution of angiosperm nuclear genomes. , 1998, Current opinion in plant biology.
[12] S. Martin,et al. Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[13] V. Corces,et al. Transposable element-host interactions: regulation of insertion and excision. , 1997, Annual review of genetics.
[14] A. Schulman,et al. IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques , 1999, Theoretical and Applied Genetics.
[15] M W Simmen,et al. Nonmethylated transposable elements and methylated genes in a chordate genome. , 1999, Science.
[16] K. Kasschau,et al. Cell-to-Cell and Long-Distance Transport of Viruses in Plants. , 1996, The Plant cell.
[17] J. Deragon,et al. Similar Target Site Selection Occurs in Integration of Plant and Mammalian Retroposons , 1998, Journal of Molecular Evolution.
[18] G. Drouin,et al. A plant processed pseudogene , 1987, Nature.
[19] J. Bennetzen,et al. Gene identification in a complex chromosomal continuum by local genomic cross-referencing. , 1996, The Plant journal : for cell and molecular biology.
[20] M. Knox,et al. Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea , 1998, Molecular and General Genetics MGG.
[21] Qifa Zhang,et al. The distribution and copy number of copia-like retrotransposons in rice (Oryza sativa L.) and their implications in the organization and evolution of the rice genome. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[22] T. Nagamine,et al. p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species , 1999, Theoretical and Applied Genetics.
[23] U. Kück,et al. Transposons in filamentous fungi—facts and perspectives , 1998, BioEssays : news and reviews in molecular, cellular and developmental biology.
[24] K. McLean,et al. Genetic distribution of Bare–1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP) , 1997, Molecular and General Genetics MGG.
[25] N. Okada,et al. SINEs and LINEs share common 3' sequences: a review. , 1997, Gene.
[26] D. Voytas,et al. A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin. , 1998, Molecular cell.
[27] J. Birchler,et al. Cosuppression in Drosophila: Gene Silencing of Alcohol dehydrogenase by white-Adh Transgenes Is Polycomb Dependent , 1997, Cell.
[28] C. Schmid,et al. Does SINE evolution preclude Alu function? , 1998, Nucleic acids research.
[29] D. Voytas,et al. Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana. , 1996, Genetics.
[30] A. Razin,et al. CpG methylation, chromatin structure and gene silencing—a three‐way connection , 1998, The EMBO journal.
[31] K. Tsunewaki,et al. Evolutionary dynamics of Ty1-copia group retrotransposons in grass shown by reverse transcriptase domain analysis. , 1999, Molecular biology and evolution.
[32] J. S. Heslop-Harrison,et al. Characterisation and physical localisation of Ty1-copia-like retrotransposons in four Alstroemeria species. , 1998, Genome.
[33] S. Warwick,et al. Evolution of SINE S1 retroposons in Cruciferae plant species. , 1997, Molecular biology and evolution.
[34] J. Bennetzen,et al. Specificity and regulation of the Mutator transposable element system in maize , 1993 .
[35] H. Hirochika,et al. Retrotransposons of rice involved in mutations induced by tissue culture. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[36] G. Presting,et al. A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes. , 1998, The Plant journal : for cell and molecular biology.
[37] I. Leitch,et al. Polyploidy in angiosperms , 1997 .
[38] D. Voytas,et al. A copia-like transposable element family in Arabidopsis thaliana , 1988, Nature.
[39] D. Voytas,et al. A superfamily of Arabidopsis thaliana retrotransposons. , 1991, Genetics.
[40] M. Matzke,et al. Position effects and epigenetic silencing of plant transgenes. , 1998, Current opinion in plant biology.
[41] R. Michelmore,et al. The Major Resistance Gene Cluster in Lettuce Is Highly Duplicated and Spans Several Megabases , 1998, Plant Cell.
[42] M. Matsuoka,et al. Loss‐of‐function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants , 1999, The EMBO journal.
[43] A. Flavell,et al. Plant transposable elements and the genome. , 1994, Current opinion in genetics & development.
[44] A. Brennicke,et al. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides , 1997, Nature Genetics.
[45] R. Motohashi,et al. Structures and distribution of p-SINE1 members in rice genomes , 1997, Theoretical and Applied Genetics.
[46] J. Bennetzen,et al. Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize. , 1994, The Plant cell.
[47] I. K. Jordan,et al. Evidence for the Role of Recombination in the Regulatory Evolution of Saccharomyces cerevisiae Ty Elements , 1998, Journal of Molecular Evolution.
[48] S. Wessler,et al. Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[49] M. Grandbastien,et al. The evolutionary analysis of the Tnt1 retrotransposon in Nicotiana species reveals the high variability of its regulatory sequences. , 1998, Molecular biology and evolution.
[50] B. Wakimoto,et al. Beyond the Nucleosome: Epigenetic Aspects of Position–Effect Variegation in Drosophila , 1998, Cell.
[51] M. Freeling,et al. A low copy number, copia‐like transposon in maize. , 1985, The EMBO journal.
[52] J. Boeke,et al. Replication infidelity during a single cycle of Ty1 retrotransposition. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[53] A. Flavell,et al. Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes , 1999, Molecular and General Genetics MGG.
[54] J. Boeke,et al. An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. , 1994, Genes & development.
[55] T. Eickbush,et al. Origin and evolution of retroelements based upon their reverse transcriptase sequences. , 1990, The EMBO journal.
[56] H. Temin. Origin of retroviruses from cellular moveable genetic elements , 1980, Cell.
[57] K. Noma,et al. Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes , 1999, Molecular and General Genetics MGG.
[58] R. Phillips,et al. Complex structure of knob DNA on maize chromosome 9. Retrotransposon invasion into heterochromatin. , 1998, Genetics.
[59] M. Morgante,et al. Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. , 1999, The Plant journal : for cell and molecular biology.
[60] H. Hirochika,et al. Extrachromosomal circular forms of the tobacco retrotransposon Tto1. , 1995, Gene.
[61] Eviatar Nevo,et al. Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum , 1999, Plant Cell.
[62] V. Williamson,et al. Transposable elements in yeast. , 1983, International review of cytology.
[63] E. Ohtsubo,et al. Identification and characterization of novel retrotransposons of the gypsy type in rice , 1999, Molecular and General Genetics MGG.
[64] Phillip SanMiguel,et al. Evidence that a Recent Increase in Maize Genome Size was Caused by the Massive Amplification of Intergene Retrotransposons , 1998 .
[65] M J Varagona,et al. Alternative splicing induced by insertion of retrotransposons into the maize waxy gene. , 1992, The Plant cell.
[66] P. Schulze-Lefert,et al. A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome. , 1998, Nucleic acids research.
[67] M. Grunstein. Yeast Heterochromatin: Regulation of Its Assembly and Inheritance by Histones , 1998, Cell.
[68] M. Grandbastien,et al. Characterisation of LTR sequences involved in the protoplast specific expression of the tobacco Tnt1 retrotransposon. , 1993, Nucleic acids research.
[69] A. Schulman,et al. Gypsy-like retrotransposons are widespread in the plant kingdom. , 1998, The Plant journal : for cell and molecular biology.
[70] S. Wessler,et al. Extreme structural heterogeneity among the members of a maize retrotransposon family. , 1998, Genetics.
[71] J. S. Heslop-Harrison,et al. The Ty1-copia group retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localisation , 1996 .
[72] R. O’Neill,et al. Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid , 1998, Nature.
[73] S. Wessler,et al. Molecular evolution of magellan, a maize Ty3/gypsy-like retrotransposon. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[74] D. Smyth,et al. Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[75] O. Riera-Lizarazu,et al. Oat-maize chromosome addition lines: a new system for mapping the maize genome. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[76] T. Heidmann,et al. Taming of transposable elements by homology-dependent gene silencing , 1999, Nature Genetics.
[77] A. Flavell,et al. Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. , 1998, The Plant journal : for cell and molecular biology.
[78] D. Mager,et al. Functional heterogeneity of a large family of human LTR-like promoters and enhancers. , 1990, Nucleic acids research.
[79] D. Voytas,et al. copia-like retrotransposons are ubiquitous among plants. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[80] Steven Henikoff,et al. Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila , 1994, Cell.
[81] S. Wessler,et al. LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. , 1995, Current opinion in genetics & development.
[82] Takashi Yamada,et al. Zepp, a LINE‐like retrotransposon accumulated in the Chlorella telomeric region , 1997, The EMBO journal.
[83] M. G. Kidwell,et al. Transposable elements as sources of variation in animals and plants. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[84] B. Ganem. RNA world , 1987, Nature.
[85] A. Schulman,et al. Bare-1 insertion site preferences and evolutionary conservation of RNA and cDNA processing sites , 2004, Genetica.
[86] S. Scherer,et al. Germline and somatic mutations in the tyrosine kinase domain of the MET proto-oncogene in papillary renal carcinomas , 1997, Nature Genetics.
[87] Albert Spielmann,et al. Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics , 1989, Nature.
[88] H. Hirochika. Activation of tobacco retrotransposons during tissue culture. , 1993, The EMBO journal.
[89] J. Haber,et al. Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks , 1996, Nature.
[90] D. Voytas,et al. Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins. , 1998, Genetics.
[91] C. Dumas,et al. A functional S locus anther gene is not required for the self-incompatibility response in Brassica oleracea. , 1997, The Plant cell.
[92] N. Craig. Target site selection in transposition. , 1997, Annual review of biochemistry.
[93] A. Flavell,et al. Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. , 1999, The Plant journal : for cell and molecular biology.
[94] W. Doolittle,et al. Selfish genes, the phenotype paradigm and genome evolution , 1980, Nature.
[95] M. Caboche,et al. Specific expression of the tobacco Tnt1 retrotransposon in protoplasts. , 1991, The EMBO journal.
[96] H. Saedler,et al. Similarity of the Cin1 repetitive family of Zea mays to eukaryotic transposable elements , 1984, Nature.
[97] Stephen M. Mount,et al. Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins , 1985, Molecular and cellular biology.
[98] J. Bennetzen,et al. The contributions of retroelements to plant genome organization, function and evolution. , 1996, Trends in microbiology.
[99] G. Igloi,et al. Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. , 1995, Journal of molecular biology.
[100] T. Eickbush,et al. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition , 1993, Cell.
[101] S. Wessler,et al. Transposon signatures: species‐specific molecular markers that utilize a class of multiple‐copy nuclear DNA , 1995, Molecular ecology.
[102] T. Eickbush. Telomerase and Retrotransposons: Which Came First? , 1997, Science.
[103] D. Voytas,et al. The structure, distribution and evolution of the Ta1 retrotransposable element family of Arabidopsis thaliana. , 1990, Genetics.
[104] Amar Kumar. The evolution of plant retroviruses: moving to green pastures , 1998 .
[105] D. Voytas,et al. Silent chromatin determines target preference of the Saccharomyces retrotransposon Ty5. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[106] M. Grandbastien. Activation of plant retrotransposons under stress conditions , 1998 .
[107] R. Martienssen. Epigenetic phenomena: Epigenetic phenomena: Paramutation and gene silencing in plants , 1996, Current Biology.
[108] E. Gaucher,et al. SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[109] H. Lipshitz,et al. Spatially regulated expression of retrovirus-like transposons during Drosophila melanogaster embryogenesis. , 1994, Genetical research.
[110] S. Wessler,et al. A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[111] J. S. Heslop-Harrison,et al. The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[112] M. Hattori,et al. RNA polymerase III dependence of the human L1 promoter and possible participation of the RNA polymerase II factor YY1 in the RNA polymerase III transcription system. , 1995, Nucleic acids research.
[113] B. Mcclintock,et al. The significance of responses of the genome to challenge. , 1984, Science.
[114] F. Crick,et al. Selfish DNA: the ultimate parasite , 1980, Nature.
[115] J. McDonald,et al. Analysis of copia sequence variation within and between Drosophila species. , 1995, Molecular biology and evolution.
[116] S. Wessler,et al. Transduction of a cellular gene by a plant retroelement , 1994, Cell.
[117] J. Bennetzen,et al. Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[118] J. S. Heslop-Harrison,et al. Chromosomal and genomic organization of Ty1-copia-like retrotransposon sequences in the genus Avena. , 1996, Genome.
[119] K. Noma,et al. RIRE1, a retrotransposon from wild rice Oryza australiensis. , 1997, Genes & genetic systems.
[120] J. Bennetzen,et al. Nested Retrotransposons in the Intergenic Regions of the Maize Genome , 1996, Science.
[121] F. Feuerbach,et al. Retrovirus-like end processing of the tobacco Tnt1 retrotransposon linear intermediates of replication , 1997, Journal of virology.
[122] D. Voytas,et al. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. , 1998, Genome research.
[123] M. Grandbastien. Retroelements in higher plants. , 1992, Trends in genetics : TIG.
[124] J. Pozueta-Romero,et al. Identification of a short interspersed repetitive element in partially spliced transcripts of the bell pepper (Capsicum annuum) PAP gene: new evolutionary and regulatory aspects on plant tRNA-related SINEs. , 1998, Gene.
[125] P. Piffanelli,et al. Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana , 1998, Nature.
[126] A. Smit,et al. The origin of interspersed repeats in the human genome. , 1996, Current opinion in genetics & development.
[127] A. Flavell,et al. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. , 1992, Nucleic acids research.
[128] C. Walsh,et al. Cytosine methylation and the ecology of intragenomic parasites. , 1997, Trends in genetics : TIG.
[129] J. Bennetzen,et al. Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA. , 1994, Genome.
[130] T. Eickbush. Transposing without ends: the non-LTR retrotransposable elements. , 1992, The New biologist.
[131] Phillip SanMiguel,et al. The paleontology of intergene retrotransposons of maize , 1998, Nature Genetics.
[132] M. Grandbastien,et al. Microbial elicitors of plant defence responses activate transcription of a retrotransposon , 1994 .
[133] Takashi Yamada,et al. Molecular anatomy of a small chromosome in the green alga Chlorella vulgaris. , 1998, Nucleic acids research.
[134] J. Bennetzen,et al. Colinearity and its exceptions in orthologous adh regions of maize and sorghum. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[135] R. Flavell,et al. A family of retrotransposons and associated genomic variation in wheat. , 1991, Genomics.
[136] D. Garfinkel,et al. New lines of host defense: inhibition of Ty1 retrotransposition by Fus3p and NER/TFIIH. , 1999, Trends in genetics : TIG.
[137] J. Bennetzen,et al. Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice. , 1998, Genetics.
[138] A. Flavell,et al. Characterization and genomic organization of Ty1-copia group retrotransposons in rye (Secale cereale). , 1997, Genome.
[139] Shiping Zhang,et al. Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution , 1998, Plant Cell.
[140] H. Hirochika,et al. A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors. , 1999, The Plant journal : for cell and molecular biology.
[141] H. Dooner,et al. Transposition Pattern of the Maize Element Ac from the Bz-M2(ac) Allele. , 1989, Genetics.
[142] I. K. Jordan,et al. Tempo and mode of Ty element evolution in Saccharomyces cerevisiae. , 1999, Genetics.
[143] M Caboche,et al. RNA‐mediated transposition of the tobacco retrotransposon Tnt1 in Arabidopsis thaliana. , 1995, The EMBO journal.
[144] S. Jackson,et al. Retrotransposon-related DNA sequences in the centromeres of grass chromosomes. , 1998, Genetics.
[145] N. Okada,et al. Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[146] Dmitrii Petrov,et al. Slow but Steady: Reduction of Genome Size through Biased Mutation. , 1997, The Plant cell.
[147] F. Vignols,et al. The brown midrib3 (bm3) mutation in maize occurs in the gene encoding caffeic acid O-methyltransferase. , 1995, The Plant cell.
[148] S. Wessler,et al. Retrotransposon insertion into the maize waxy gene results in tissue-specific RNA processing. , 1997, The Plant cell.
[149] J. Messing,et al. Amplicons of maize zein genes are conserved within genic but expanded and constricted in intergenic regions. , 1998, The Plant journal : for cell and molecular biology.
[150] G. Wang,et al. Evolution of the rice Xa21 disease resistance gene family. , 1997, The Plant cell.
[151] J. Boeke,et al. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. , 1998, Biochemistry.
[152] G. Moore,et al. Cereal Genome Evolution: Grasses, line up and form a circle , 1995, Current Biology.
[153] J. Bennetzen,et al. Do Plants Have a One-Way Ticket to Genomic Obesity? , 1997, The Plant cell.
[154] A. Brennicke,et al. Plastid, nuclear and reverse transcriptase sequences in the mitochondrial genome of Oenothera: is genetic information transferred between organelles via RNA? , 1987, The EMBO journal.