Microarray data classification using neuro-fuzzy classifier with firefly algorithm

Neuro-fuzzy is one of the popular tools used in many applications including microarray classification. In this paper, we introduce a neuro-fuzzy with firefly algorithm with its application to microarray classification. Our neuro-fuzzy is able to select good feature sets and generate rule sets as classifier. We compare our results on seven public data sets, i.e., Lung cancer, Ovarian cancer, Prostate cancer, Leukemia (ALL/AML), Breast cancer, Colon cancer, and Diffuse large B-cell lymphoma (DLBCL), with the results from the existing algorithms. We found that our algorithm can provide comparable results with smaller numbers of selected features. However, our algorithm can provide more understandable rule sets to human than other existing algorithms.

[1]  S. Ramakrishnan,et al.  Binary classification of cancer microarray gene expression data using extreme learning machines , 2014, 2014 IEEE International Conference on Computational Intelligence and Computing Research.

[2]  Hong Yan,et al.  Biomarker Identification and Cancer Classification Based on Microarray Data Using Laplace Naive Bayes Model with Mean Shrinkage , 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[3]  S. Ramakrishnan,et al.  A hybrid approach to feature selection using correlation coefficient and fuzzy rough quick reduct algorithm applied to cancer microarray data , 2016, 2016 10th International Conference on Intelligent Systems and Control (ISCO).

[4]  Yong Xu,et al.  Neuro-Fuzzy Ensemble Approach for Microarray Cancer Gene Expression Data Analysis , 2006, 2006 International Symposium on Evolving Fuzzy Systems.

[5]  Nipaporn Thipmanee Identification of rectal cancer genes by microarray analysis = การระบุยีนมะเร็งลำไส้ตรงโดยการวิเคราะห์ไมโครอะเรย์ / Nipaporn Thipmanee , 2011 .

[6]  Phongphun Kijsanayothin,et al.  Tumor classification ranking from microarray data , 2008, BMC Genomics.

[7]  Rahim Ghayour,et al.  Maximum correlation minimum redundancy in weighted gene selection , 2013, 2013 International Conference on Electronics, Computer and Computation (ICECCO).

[8]  Nikhil R. Pal,et al.  A neuro-fuzzy scheme for simultaneous feature selection and fuzzy rule-based classification , 2004, IEEE Transactions on Neural Networks.

[9]  Saima Rathore,et al.  A novel approach for automatic gene selection and classification of gene based colon cancer datasets , 2014, 2014 International Conference on Emerging Technologies (ICET).

[10]  Mohammad Hosein Yas,et al.  Application of firefly algorithm and ANFIS for optimisation of functionally graded beams , 2014, J. Exp. Theor. Artif. Intell..

[11]  Ujjwal Maulik,et al.  Identifying Cancer Biomarkers From Microarray Data Using Feature Selection and Semisupervised Learning , 2014, IEEE Journal of Translational Engineering in Health and Medicine.

[12]  Maleerat Sodanil,et al.  Prediction of stock price using an adaptive Neuro-Fuzzy Inference System trained by Firefly Algorithm , 2013, 2013 International Computer Science and Engineering Conference (ICSEC).

[13]  Kashi Nath Dey,et al.  Gene ranking: An entropy & decision tree based approach , 2016, 2016 IEEE 7th Annual Ubiquitous Computing, Electronics & Mobile Communication Conference (UEMCON).

[14]  Sina Mahmoudi,et al.  ANFIS-based wrapper model gene selection for cancer classification on microarray gene expression data , 2013, 2013 13th Iranian Conference on Fuzzy Systems (IFSC).

[15]  Swati Vipsita,et al.  An efficient approach for microarray data classification using filter wrapper hybrid approach , 2015, 2015 IEEE International Advance Computing Conference (IACC).

[16]  José Antonio Castellanos Garzón,et al.  A Gene Selection Approach based on Clustering for Classification Tasks in Colon Cancer , 2016 .

[17]  Nir Friedman,et al.  Tissue classification with gene expression profiles. , 2000 .

[18]  Vahid Abootalebi,et al.  Multiclass microarray data classification using SRC approximations , 2015, 2015 23rd Iranian Conference on Electrical Engineering.

[19]  Yukyee Leung,et al.  A Multiple-Filter-Multiple-Wrapper Approach to Gene Selection and Microarray Data Classification , 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.