A large scale expression study associates uc.283-plus lncRNA with pluripotent stem cells and human glioma

[1]  M. Esteller,et al.  Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region. , 2014, Molecular cell.

[2]  B. Plosky An ultraconserved lnc to miRNA processing. , 2014, Molecular cell.

[3]  David T. W. Jones,et al.  Connect Four with Glioblastoma Stem Cell Factors , 2014, Cell.

[4]  T. Ørntoft,et al.  Identification of expressed and conserved human noncoding RNAs , 2014, RNA.

[5]  T. Kamimoto,et al.  MicroRNA-196a Is a Putative Diagnostic Biomarker and Therapeutic Target for Laryngeal Cancer , 2013, PloS one.

[6]  Weiguo Lu,et al.  MicroRNA profile of paclitaxel-resistant serous ovarian carcinoma based on formalin-fixed paraffin-embedded samples , 2013, BMC Cancer.

[7]  A. Schetter,et al.  Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer , 2013, Molecular Cancer.

[8]  Albert E. Almada,et al.  Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells , 2013, Proceedings of the National Academy of Sciences.

[9]  Jorng-Tzong Horng,et al.  An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs , 2013, BMC Bioinformatics.

[10]  Anderson Chun On Tsang,et al.  Long non-coding RNA expression profiles predict clinical phenotypes in glioma , 2012, Neurobiology of Disease.

[11]  H. Sontheimer,et al.  Unique biology of gliomas: challenges and opportunities , 2012, Trends in Neurosciences.

[12]  Sean J Morrison,et al.  Cancer stem cells: impact, heterogeneity, and uncertainty. , 2012, Cancer cell.

[13]  P. Stadler,et al.  ViennaRNA Package 2.0 , 2011, Algorithms for Molecular Biology : AMB.

[14]  Timothy J. Durham,et al.  "Systematic" , 1966, Comput. J..

[15]  T. Mine,et al.  Short GC-rich RNA similar to miR 1909 and 1915 folds in silico with the 5'-UTR and ORF of Notch and responders: potential for the elimination of cancer stem cells. , 2010, Oncology reports.

[16]  M. Esteller,et al.  CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer , 2010, Oncogene.

[17]  M. Ringnér,et al.  An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours , 2010, Oncogene.

[18]  Y. Pekarsky,et al.  Reprogramming of miRNA networks in cancer and leukemia. , 2010, Genome research.

[19]  E. Stupka,et al.  Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements , 2010, BMC Genomics.

[20]  S. Volinia,et al.  Non-coding RNAs: a key to future personalized molecular therapy? , 2010, Genome Medicine.

[21]  G. Tonini,et al.  Transcribed-ultra conserved region expression is associated with outcome in high-risk neuroblastoma , 2009, BMC Cancer.

[22]  Rolf Backofen,et al.  Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1 , 2009, Bioinform..

[23]  J. Mattick,et al.  Long non-coding RNAs: insights into functions , 2009, Nature Reviews Genetics.

[24]  Rolf Backofen,et al.  IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions , 2008, Bioinform..

[25]  W. L. Ruzzo,et al.  MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries , 2008, Stem cells.

[26]  G. Calin,et al.  Cancer-associated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic implications , 2008, Mammalian Genome.

[27]  Lin Zhang,et al.  Ultraconserved elements: Genomics, function and disease , 2008, RNA biology.

[28]  Ronny Lorenz,et al.  The Vienna RNA Websuite , 2008, Nucleic Acids Res..

[29]  Thomas D. Schmittgen,et al.  Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. , 2007, Cancer cell.

[30]  David Haussler,et al.  Human Genome Ultraconserved Elements Are Ultraselected , 2007, Science.

[31]  C. Sander,et al.  A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing , 2007, Cell.

[32]  Alan M. Moses,et al.  In vivo enhancer analysis of human conserved non-coding sequences , 2006, Nature.

[33]  Inna Dubchak,et al.  VISTA Enhancer Browser—a database of tissue-specific human enhancers , 2006, Nucleic Acids Res..

[34]  Peter F. Stadler,et al.  Thermodynamics of RNA-RNA Binding , 2006, German Conference on Bioinformatics.

[35]  D. Haussler,et al.  A distal enhancer and an ultraconserved exon are derived from a novel retroposon , 2006, Nature.

[36]  C. Croce,et al.  A microRNA expression signature of human solid tumors defines cancer gene targets , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Muller Fabbri,et al.  A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. , 2005, The New England journal of medicine.

[38]  M. Nóbrega,et al.  In vivo characterization of a vertebrate ultraconserved enhancer. , 2005, Genomics.

[39]  D. Haussler,et al.  Ultraconserved Elements in the Human Genome , 2004, Science.

[40]  Terence P. Speed,et al.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..

[41]  P. Radice,et al.  SNPs in ultraconserved elements and familial breast cancer risk. , 2009, Carcinogenesis.

[42]  M. Fabbri,et al.  MicroRNAs and noncoding RNAs in hematological malignancies: molecular, clinical and therapeutic implications , 2008, Leukemia.

[43]  R. Simon,et al.  Analysis of Gene Expression Data Using BRB-Array Tools , 2006 .