Machine learning topological defects of confined liquid crystals in two dimensions.

Supervised machine learning can be used to classify images with spatially correlated physical features. We demonstrate the concept by using the coordinate files generated from an off-lattice computer simulation of rodlike molecules confined in a square box as an example. Because of the geometric frustrations at high number density, the nematic director field develops an inhomogeneous pattern containing various topological defects as the main physical feature. We describe two machine-learning procedures that can be used to effectively capture the correlation between the defect positions and the nematic directors around them and hence classify the topological defects. First is a feedforward neural network, which requires the aid of presorting the off-lattice simulation data in a coarse-grained fashion. Second is a recurrent neural network, which needs no such sorting and can be directly used for finding spatial correlations. The issues of when to presort a simulation data file and how the network structures affect such a decision are addressed.

[1]  Apala Majumdar,et al.  From molecular to continuum modelling of bistable liquid crystal devices , 2017 .

[2]  B. Mulder,et al.  Defect structures mediate the isotropic-nematic transition in strongly confined liquid crystals. , 2015, Soft matter.

[3]  Juan Carrasquilla,et al.  Machine learning quantum phases of matter beyond the fermion sign problem , 2016, Scientific Reports.

[4]  Apala Majumdar,et al.  Multistability in planar liquid crystal wells. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

[5]  Nitish Srivastava,et al.  Dropout: a simple way to prevent neural networks from overfitting , 2014, J. Mach. Learn. Res..

[6]  Roger G. Melko,et al.  Machine learning vortices at the Kosterlitz-Thouless transition , 2017, 1710.09842.

[7]  J. Alvarado,et al.  Self-organized patterns of actin filaments in cell-sized confinement , 2011 .

[8]  Jeff Z Y Chen,et al.  Identifying polymer states by machine learning. , 2017, Physical review. E.

[9]  Yongxiang Gao,et al.  Colloidal liquid crystals in square confinement: isotropic, nematic and smectic phases , 2017, Journal of physics. Condensed matter : an Institute of Physics journal.

[10]  J. Alvarado,et al.  Colloidal liquid crystals in rectangular confinement: theory and experiment. , 2014, Soft matter.

[11]  Wolfgang Losert,et al.  Spontaneous patterning of confined granular rods. , 2006, Physical review letters.

[12]  Roger G. Melko,et al.  Learning Thermodynamics with Boltzmann Machines , 2016, ArXiv.

[13]  Jeff Z. Y. Chen Structure of two-dimensional rods confined by a line boundary , 2013 .

[14]  C Tsakonas,et al.  Multistable alignment states in nematic liquid crystal filled wells , 2007 .

[15]  Marco Cosentino Lagomarsino,et al.  Isotropic-nematic transition of long, thin, hard spherocylinders confined in a quasi-two-dimensional planar geometry , 2003 .

[16]  R. Melko,et al.  Machine Learning Phases of Strongly Correlated Fermions , 2016, Physical Review X.

[17]  Jürgen Schmidhuber,et al.  Long Short-Term Memory , 1997, Neural Computation.

[18]  Chen Continuous isotropic-nematic transition of partially flexible polymers in two dimensions. , 1993, Physical review letters.

[19]  Yoshua Bengio,et al.  Gradient-based learning applied to document recognition , 1998, Proc. IEEE.

[20]  F ROSENBLATT,et al.  The perceptron: a probabilistic model for information storage and organization in the brain. , 1958, Psychological review.

[21]  S. Huber,et al.  Learning phase transitions by confusion , 2016, Nature Physics.

[22]  Roger G. Melko,et al.  Machine learning phases of matter , 2016, Nature Physics.

[23]  Jeff Z. Y. Chen,et al.  Topological defects in two-dimensional liquid crystals confined by a box. , 2018, Physical review. E.

[24]  Roger G. Melko,et al.  Deep Learning the Ising Model Near Criticality , 2017, J. Mach. Learn. Res..

[25]  H. J. Raveché,et al.  Bifurcation in Onsager's model of the isotropic-nematic transition , 1978 .

[26]  Poniewierski Ordering of hard needles at a hard wall. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[27]  K. Binder,et al.  A Guide to Monte Carlo Simulations in Statistical Physics: Preface , 2005 .

[28]  Jürgen Schmidhuber,et al.  Deep learning in neural networks: An overview , 2014, Neural Networks.

[29]  Manuel Scherzer,et al.  Machine Learning of Explicit Order Parameters: From the Ising Model to SU(2) Lattice Gauge Theory , 2017, 1705.05582.

[30]  Chen,et al.  Orientational wetting layer of semiflexible polymers near a hard wall. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[31]  Jeff Z. Y. Chen,et al.  Surface-Induced Liquid Crystal Transitions of Wormlike Polymers Confined in a Narrow Slit. A Mean-Field Theory , 2007 .

[32]  Frenkel,et al.  Evidence for algebraic orientational order in a two-dimensional hard-core nematic. , 1985, Physical review. A, General physics.

[33]  Matthias Troyer,et al.  Neural-network quantum state tomography , 2018 .