Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model
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Enrico Macii | Andrea Acquaviva | Giovanni Martinelli | Elisa Ficarra | Francesco Abate | Giulia Paciello | Alberto Ferrarini | Massimo Delledonne | Simona Soverini | Ilaria Iacobucci | Carmelo Foti | E. Macii | G. Martinelli | M. Delledonne | G. Paciello | A. Acquaviva | E. Ficarra | I. Iacobucci | F. Abate | A. Ferrarini | S. Soverini | C. Foti | Giulia Paciello
[1] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[2] David Z. Chen,et al. METHOD Open Access , 2014 .
[3] A. Børresen-Dale,et al. Identification of fusion genes in breast cancer by paired-end RNA-sequencing , 2011, Genome Biology.
[4] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[5] Süleyman Cenk Sahinalp,et al. deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data , 2011, PLoS Comput. Biol..
[6] J. Maguire,et al. Integrative analysis of the melanoma transcriptome. , 2010, Genome research.
[7] Jian Ma,et al. FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq , 2011, Bioinform..
[8] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[9] Derek Y. Chiang,et al. MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery , 2010, Nucleic acids research.
[10] Michael A Quail,et al. Improved Protocols for the Illumina Genome Analyzer Sequencing System , 2009, Current protocols in human genetics.
[11] Christopher A. Maher,et al. ChimeraScan: a tool for identifying chimeric transcription in sequencing data , 2011, Bioinform..
[12] Fang Fang,et al. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution , 2011, Bioinform..
[13] M. Ruggero,et al. Similarity of Traveling-Wave Delays in the Hearing Organs of Humans and Other Tetrapods , 2007, Journal for the Association for Research in Otolaryngology.
[14] S. Luo,et al. Chimeric transcript discovery by paired-end transcriptome sequencing , 2009, Proceedings of the National Academy of Sciences.
[15] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[16] Weng-Keen Wong,et al. Gene expression Advance Access publication April 21, 2010 Supersplat—spliced RNA-seq alignment , 2009 .
[17] Lee T. Sam,et al. Transcriptome Sequencing to Detect Gene Fusions in Cancer , 2009, Nature.
[18] M. Baccarani,et al. IDH2 somatic mutations in chronic myeloid leukemia patients in blast crisis , 2011, Leukemia.
[19] David Haussler,et al. The UCSC Genome Browser database: update 2010 , 2009, Nucleic Acids Res..
[20] L. Feuk,et al. Global and unbiased detection of splice junctions from RNA-seq data , 2010, Genome Biology.
[21] Steven J. M. Jones,et al. MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers , 2011, Nature.