Metabolic modeling and response surface analysis of an Escherichia coli strain engineered for shikimic acid production
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Alvaro R. Lara | F. Bolivar | G. Gosset | O. Ramírez | N. Flores | Alberto Rodriguez | Juan A. Martínez | Fabian Moreno
[1] Jean-Charles Portais,et al. Plasmid‐encoded biosynthetic genes alleviate metabolic disadvantages while increasing glucose conversion to shikimate in an engineered Escherichia coli strain , 2017, Biotechnology and bioengineering.
[2] M. Inui,et al. Metabolic engineering of Corynebacterium glutamicum for shikimate overproduction by growth-arrested cell reaction. , 2016, Metabolic engineering.
[3] Francisco Bolívar,et al. Shikimic Acid Production in Escherichia coli: From Classical Metabolic Engineering Strategies to Omics Applied to Improve Its Production , 2015, Front. Bioeng. Biotechnol..
[4] Edward J. O'Brien,et al. Computing the functional proteome: recent progress and future prospects for genome-scale models. , 2015, Current opinion in biotechnology.
[5] M. R. Long,et al. Computational methods in metabolic engineering for strain design. , 2015, Current opinion in biotechnology.
[6] R. Burnap. Systems and Photosystems: Cellular Limits of Autotrophic Productivity in Cyanobacteria , 2014, Front. Bioeng. Biotechnol..
[7] C. Maranas,et al. Recent advances in the reconstruction of metabolic models and integration of omics data. , 2014, Current opinion in biotechnology.
[8] Marjan De Mey,et al. Multivariate modular metabolic engineering for pathway and strain optimization. , 2014, Current opinion in biotechnology.
[9] Francisco Bolivar,et al. Engineering Escherichia coli to overproduce aromatic amino acids and derived compounds , 2014, Microbial Cell Factories.
[10] Wei Shen,et al. Metabolic engineering of Escherichia coli for improving shikimate synthesis from glucose. , 2014, Bioresource technology.
[11] Stephen S. Fong,et al. Computational approaches to metabolic engineering utilizing systems biology and synthetic biology , 2014, Computational and structural biotechnology journal.
[12] Francisco Bolívar,et al. Current perspectives on applications of shikimic and aminoshikimic acids in pharmaceutical chemistry , 2014 .
[13] Daniel Machado,et al. Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism , 2014, PLoS Comput. Biol..
[14] Jian-Zhong Liu,et al. Production of shikimic acid from Escherichia coli through chemically inducible chromosomal evolution and cofactor metabolic engineering , 2014, Microbial Cell Factories.
[15] Ying Li,et al. Isolation of a novel alkaline-stable lipase from a metagenomic library and its specific application for milkfat flavor production , 2014, Microbial Cell Factories.
[16] Francisco Bolivar,et al. Constitutive expression of selected genes from the pentose phosphate and aromatic pathways increases the shikimic acid yield in high-glucose batch cultures of an Escherichia coli strain lacking PTS and pykF , 2013, Microbial Cell Factories.
[17] H. Orozco,et al. Genetic manipulation of longevity-related genes as a tool to regulate yeast life span and metabolite production during winemaking , 2013, Microbial Cell Factories.
[18] Amalia Estévez,et al. A short overview on the medicinal chemistry of (-)-shikimic acid. , 2012, Mini reviews in medicinal chemistry.
[19] Saptarshi Ghosh,et al. Production of shikimic acid. , 2012, Biotechnology advances.
[20] Christian Baumgartner,et al. MUMAL: Multivariate analysis in shotgun proteomics using machine learning techniques , 2012, BMC Genomics.
[21] Paula Jouhten,et al. Metabolic modelling in the development of cell factories by synthetic biology , 2012, Computational and structural biotechnology journal.
[22] F. Bolivar,et al. Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport system , 2012, BMC Genomics.
[23] Sang Yup Lee,et al. Recent advances in reconstruction and applications of genome-scale metabolic models. , 2012, Current opinion in biotechnology.
[24] Doraiswami Ramkrishna,et al. Dynamic models of metabolism: Review of the cybernetic approach , 2012 .
[25] Doraiswami Ramkrishna,et al. Prediction of dynamic behavior of mutant strains from limited wild-type data. , 2012, Metabolic engineering.
[26] Lore Cloots,et al. Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria. , 2011, Current opinion in microbiology.
[27] L. Qin,et al. Illicium verum: a review on its botany, traditional use, chemistry and pharmacology. , 2011, Journal of ethnopharmacology.
[28] José L. Iborra,et al. Metabolic adaptation of Escherichia coli to long-term exposure to salt stress , 2010 .
[29] Guillermo Gosset,et al. Production of aromatic compounds in bacteria. , 2009, Current opinion in biotechnology.
[30] J. Liao,et al. Ensemble Modeling for Aromatic Production in Escherichia coli , 2009, PloS one.
[31] K. N. Ganeshaiah,et al. Prospecting for alternate sources of shikimic acid, a precursor of Tamiflu, a bird-flu drug , 2009 .
[32] D. Ramkrishna,et al. Reduction of a set of elementary modes using yield analysis , 2009, Biotechnology and bioengineering.
[33] Dong-Yup Lee,et al. Exploring the effects of carbon sources on the metabolic capacity for shikimic acid production in Escherichia coli using in silico metabolic predictions. , 2008, Journal of microbiology and biotechnology.
[34] Jörg Stelling,et al. Large-scale computation of elementary flux modes with bit pattern trees , 2008, Bioinform..
[35] Francisco Bolívar,et al. Acetate Metabolism in Escherichia coli Strains Lacking Phosphoenolpyruvate: Carbohydrate Phosphotransferase System; Evidence of Carbon Recycling Strategies and Futile Cycles , 2008, Journal of Molecular Microbiology and Biotechnology.
[36] Francisco Bolívar,et al. Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: An alternative to fed‐batch cultures , 2008, Biotechnology and bioengineering.
[37] F. Bolivar,et al. Coutilization of glucose and glycerol enhances the production of aromatic compounds in an Escherichia coli strain lacking the phosphoenolpyruvate: carbohydrate phosphotransferase system , 2008, Microbial cell factories.
[38] U. Sauer,et al. Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli , 2007, Molecular systems biology.
[39] M. S. Gelfand,et al. Use of the flux model of amino acid metabolism of Escherichia coli , 2006, Biochemistry (Moscow).
[40] Alfredo Martínez,et al. Role of Pyruvate Oxidase in Escherichia coli Strains Lacking the Phosphoenolpyruvate:Carbohydrate Phosphotransferase System , 2005, Journal of Molecular Microbiology and Biotechnology.
[41] Francisco Bolívar,et al. Adaptation for fast growth on glucose by differential expression of central carbon metabolism and gal regulon genes in an Escherichia coli strain lacking the phosphoenolpyruvate:carbohydrate phosphotransferase system. , 2005, Metabolic engineering.
[42] J. Nielsen,et al. Integration of gene expression data into genome-scale metabolic models. , 2004, Metabolic engineering.
[43] J. Stelling. Mathematical models in microbial systems biology. , 2004, Current opinion in microbiology.
[44] F. Bolivar,et al. Metabolic engineering and protein directed evolution increase the yield of L‐phenylalanine synthesized from glucose in Escherichia coli , 2004, Biotechnology and bioengineering.
[45] M. Araúzo-Bravo,et al. Effect of a pyruvate kinase (pykF-gene) knockout mutation on the control of gene expression and metabolic fluxes in Escherichia coli. , 2004, FEMS microbiology letters.
[46] Susan Jones. In Brief , 2004, Nature Reviews Microbiology.
[47] Kiran Raosaheb Patil,et al. Use of genome-scale microbial models for metabolic engineering. , 2004, Current opinion in biotechnology.
[48] Kazuyuki Shimizu,et al. Gene expression patterns for metabolic pathway in pgi knockout Escherichia coli with and without phb genes based on RT-PCR. , 2003, Journal of biotechnology.
[49] Roel Bovenberg,et al. Metabolic engineering for microbial production of shikimic acid. , 2003, Metabolic engineering.
[50] Jason A. Papin,et al. Genome-scale microbial in silico models: the constraints-based approach. , 2003, Trends in biotechnology.
[51] A. D. de Graaf,et al. Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by (13)C labeling and NMR spectroscopy. , 2002, Metabolic Engineering.
[52] Abhijit Anand Namjoshi,et al. Multiplicity and stability of steady states in continuous bioreactors: dissection of cybernetic models , 2001 .
[53] M. Wubbolts,et al. Metabolic engineering for microbial production of aromatic amino acids and derived compounds. , 2001, Metabolic engineering.
[54] B O Palsson,et al. Metabolic modeling of microbial strains in silico. , 2001, Trends in biochemical sciences.
[55] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[56] Doraiswami Ramkrishna,et al. The non-linear analysis of cybernetic models. Guidelines for model formulation , 1999 .
[57] J. Liao,et al. Pathway engineering for production of aromatics in Escherichia coli: Confirmation of stoichiometric analysis by independent modulation of AroG, TktA, and Pps activities , 1995, Biotechnology and bioengineering.
[58] G W Luli,et al. Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations , 1990, Applied and environmental microbiology.
[59] G. T. Tsao,et al. Investigation of bacterial growth on mixed substrates: Experimental evaluation of cybernetic models , 1986, Biotechnology and bioengineering.
[60] Kazuyuki Shimizu,et al. A New Insight into the Main Metabolic Regulation of Escherichia coli Based on Systems Biology Approach , 2013 .
[61] Po Ting Chen,et al. Genomic engineering of Escherichia coli for production of intermediate metabolites in the aromatic pathway , 2011 .
[62] Kaspar Valgepea,et al. Specific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures. , 2010, Journal of biotechnology.
[63] Ralph Von Daeniken,et al. Phosphoenolpyruvate Availability and the Biosynthesis of Shikimic Acid , 2003, Biotechnology progress.
[64] J. W. Frost,et al. Modulation of Phosphoenolpyruvate Synthase Expression Increases Shikimate Pathway Product Yields in E. coli , 2002, Biotechnology progress.