Evolution of neocortical folding: A phylogenetic comparative analysis of MRI from 34 primate species
暂无分享,去创建一个
Roberto Toro | Katja Heuer | Romain Valabregue | Omer Faruk Gulban | Mathieu Santin | Marc Herbin | R. Valabrègue | P. Bazin | R. Toro | M. Herbin | Anastasia Osoianu | O. F. Gulban | K. Heuer | M. Santin | Bazin Pierre-Louis | Anastasia Osoianu | Bazin Pierre-Louis | O. Gulban
[1] Liam J. Revell,et al. phytools: an R package for phylogenetic comparative biology (and other things) , 2012 .
[2] Daniel S. Margulies,et al. An Open Resource for Non-human Primate Imaging , 2018, Neuron.
[3] J. Lefévre,et al. On the growth and form of cortical convolutions , 2016, Nature Physics.
[4] P. David,et al. Diversity spurs diversification in ecological communities , 2017, Nature Communications.
[5] Ravi S. Menon,et al. An open resource for nonhuman primate imaging , 2017, bioRxiv.
[6] A. Boudaoud,et al. Buckling of swelling gels , 2005, The European physical journal. E, Soft matter.
[7] S. Herculano‐Houzel. The Human Brain in Numbers: A Linearly Scaled-up Primate Brain , 2009, Front. Hum. Neurosci..
[8] Hans J. Johnson,et al. Advanced Normalization Tools (ANTs) , 2020 .
[9] Brian B. Avants,et al. N4ITK: Improved N3 Bias Correction , 2010, IEEE Transactions on Medical Imaging.
[10] J. Felsenstein. Maximum-likelihood estimation of evolutionary trees from continuous characters. , 1973, American journal of human genetics.
[11] David R. Anderson,et al. Multimodel Inference , 2004 .
[12] Khundrakpam Budhachandra,et al. The Neuro Bureau Preprocessing Initiative: open sharing of preprocessed neuroimaging data and derivatives , 2013 .
[13] Roberto Toro,et al. Role of mechanical morphogenesis in the development and evolution of the neocortex. , 2019, Physics of life reviews.
[14] G. Müller. Evo–devo: extending the evolutionary synthesis , 2007, Nature Reviews Genetics.
[15] L L Cavalli-Sforza,et al. Phylogenetic analysis. Models and estimation procedures. , 1967, American journal of human genetics.
[16] Roberto Toro,et al. Mechanical morphogenesis and the development of neocortical organisation , 2015, Cortex.
[17] M. A. García-Cabezas,et al. A role for intermediate radial glia in the tangential expansion of the mammalian cerebral cortex. , 2011, Cerebral cortex.
[18] R. Lande. NATURAL SELECTION AND RANDOM GENETIC DRIFT IN PHENOTYPIC EVOLUTION , 1976, Evolution; international journal of organic evolution.
[19] David P. Dobkin,et al. The quickhull algorithm for convex hulls , 1996, TOMS.
[20] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[21] A. Schleicher,et al. The human pattern of gyrification in the cerebral cortex , 2004, Anatomy and Embryology.
[22] Michael Eickenberg,et al. Machine learning for neuroimaging with scikit-learn , 2014, Front. Neuroinform..
[23] Gabriel Taubin,et al. Curve and surface smoothing without shrinkage , 1995, Proceedings of IEEE International Conference on Computer Vision.
[24] A M Dale,et al. Measuring the thickness of the human cerebral cortex from magnetic resonance images. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[25] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[26] R. Freckleton,et al. A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies , 2015, Biological journal of the Linnean Society. Linnean Society of London.
[27] A. Schleicher,et al. Gyrification in the cerebral cortex of primates. , 1989, Brain, behavior and evolution.
[28] Michael S. Gazzaniga,et al. Human: The Science Behind What Makes Us Unique , 2008 .
[29] Chet C. Sherwood,et al. Cortical development in brown capuchin monkeys: A structural MRI study , 2008, NeuroImage.
[30] Yundi Shi,et al. The UNC-Wisconsin Rhesus Macaque Neurodevelopment Database: A Structural MRI and DTI Database of Early Postnatal Development , 2017, Frontiers in neuroscience.
[31] Luke J. Matthews,et al. The 10kTrees website: A new online resource for primate phylogeny , 2010 .
[32] K. Amunts,et al. Individual variability is not noise , 2013, Trends in Cognitive Sciences.
[33] Y. Burnod,et al. A morphogenetic model for the development of cortical convolutions. , 2005, Cerebral cortex.
[34] Anders M. Dale,et al. Cortical Surface-Based Analysis I. Segmentation and Surface Reconstruction , 1999, NeuroImage.
[35] Jeroen B Smaers,et al. How humans stand out in frontal lobe scaling , 2013, Proceedings of the National Academy of Sciences.
[36] Federico De Martino,et al. A scalable method to improve gray matter segmentation at ultra high field MRI , 2018, PloS one.
[37] C. Waddington. Canalization of Development and the Inheritance of Acquired Characters , 1942, Nature.
[38] Juliane Dinse,et al. A computational framework for ultra-high resolution cortical segmentation at 7Tesla , 2014, NeuroImage.
[39] Christopher Rorden,et al. The first step for neuroimaging data analysis: DICOM to NIfTI conversion , 2016, Journal of Neuroscience Methods.
[40] Alex T. Kalinka,et al. An Adaptive Threshold in Mammalian Neocortical Evolution , 2013, bioRxiv.
[41] Guido Gerig,et al. User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability , 2006, NeuroImage.
[42] J. Felsenstein. Phylogenies and the Comparative Method , 1985, The American Naturalist.
[43] Ninon Burgos,et al. New advances in the Clinica software platform for clinical neuroimaging studies , 2019 .
[44] T. F. Hansen. STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION , 1997, Evolution; international journal of organic evolution.
[45] Chris Venditti,et al. Human frontal lobes are not relatively large , 2013, Proceedings of the National Academy of Sciences.
[46] H. Frahm,et al. Comparison of brain structure volumes in Insectivora and Primates. I. Neocortex. , 1982, Journal fur Hirnforschung.
[47] Roberto Toro,et al. On the Possible Shapes of the Brain , 2012, Evolutionary Biology.
[48] Anders M. Dale,et al. Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex , 2001, IEEE Transactions on Medical Imaging.
[49] Chet C. Sherwood,et al. Exceptional Evolutionary Expansion of Prefrontal Cortex in Great Apes and Humans , 2017, Current Biology.
[50] J. Bruggeman,et al. Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within‐species variation , 2017 .
[51] P. Schoenemann,et al. Prefrontal white matter volume is disproportionately larger in humans than in other primates , 2005, Nature Neuroscience.
[52] C. Nunn,et al. Comparative methods for studying primate adaptation and allometry , 2001 .
[53] K. Amunts,et al. Primate Prefrontal Cortex Evolution: Human Brains Are the Extreme of a Lateralized Ape Trend , 2011, Brain, Behavior and Evolution.
[54] Barbara R. Holland,et al. Analysis of Phylogenetics and Evolution with R , 2007 .
[55] J. Sundsten,et al. Folding of the Cerebral Cortex in Mammals , 1984 .
[56] Mark W. Woolrich,et al. FSL , 2012, NeuroImage.
[57] Satrajit S. Ghosh,et al. Open Neuroimaging Laboratory , 2016 .
[58] M. Pagel. Inferring the historical patterns of biological evolution , 1999, Nature.
[59] H. Frahm,et al. Comparison of brain structure volumes in Insectivora and primates. VII. Amygdaloid components. , 1987, Journal fur Hirnforschung.
[60] Jong-Min Lee,et al. Automated Sulcal Depth Measurement on Cortical Surface Reflecting Geometrical Properties of Sulci , 2013, PloS one.
[61] Camino de Juan Romero,et al. Discrete domains of gene expression in germinal layers distinguish the development of gyrencephaly , 2015, The EMBO journal.
[62] H. Damasio,et al. Humans and great apes share a large frontal cortex , 2002, Nature Neuroscience.
[63] K. Baumann. Cell migration: Invasion of the pseudopods , 2007, Nature Reviews Molecular Cell Biology.
[64] C. Nunn,et al. Quantitative uniqueness of human brain evolution revealed through phylogenetic comparative analysis , 2019, eLife.
[65] Bruno Mota,et al. Cortical folding scales universally with surface area and thickness, not number of neurons , 2015, Science.
[66] Xiao Han,et al. A Topology Preserving Level Set Method for Geometric Deformable Models , 2003, IEEE Trans. Pattern Anal. Mach. Intell..
[67] T. Tallinen,et al. Gyrification from constrained cortical expansion , 2014, Proceedings of the National Academy of Sciences.
[68] Olivier Coulon,et al. The average baboon brain: MRI templates and tissue probability maps from 89 individuals , 2016, NeuroImage.
[69] T. Insel,et al. The primate neocortex in comparative perspective using magnetic resonance imaging. , 1999, Journal of human evolution.
[70] Roger P. Woods,et al. Anatomic Brain Asymmetry in Vervet Monkeys , 2011, PloS one.
[71] R. Barton,et al. Reply to Smaers: Getting human frontal lobes in proportion , 2013, Proceedings of the National Academy of Sciences.
[72] J. L. Gittleman,et al. EARLY BURSTS OF BODY SIZE AND SHAPE EVOLUTION ARE RARE IN COMPARATIVE DATA , 2010, Evolution; international journal of organic evolution.
[73] Comment on “Cortical folding scales universally with surface area and thickness, not number of neurons” , 2016, Science.
[74] Comment on “Cortical folding scales universally with surface area and thickness, not number of neurons” , 2016, Science.
[75] C. Nunn. The Comparative Approach in Evolutionary Anthropology and Biology , 2011 .
[76] H. Frahm,et al. New and revised data on volumes of brain structures in insectivores and primates. , 1981, Folia primatologica; international journal of primatology.
[77] Pierre-Louis Bazin,et al. Topology correction of segmented medical images using a fast marching algorithm , 2007, Comput. Methods Programs Biomed..