The complete chloroplast genome sequence of Dendrobium nobile

Abstract The complete chloroplast (cp) genome sequence of Dendrobium nobile, an endangered and traditional Chinese medicine with important economic value, is presented in this article. The total genome size is 150,793 bp, containing a large single copy (LSC) region (84,939 bp) and a small single copy region (SSC) (13,310 bp) which were separated by two inverted repeat (IRs) regions (26,272 bp). The overall GC contents of the plastid genome were 38.8%. In total, 130 unique genes were annotated and they were consisted of 76 protein-coding genes, 30 tRNA genes and 4 rRNA genes. Fourteen genes contained one or two introns.

[1]  H. Yao,et al.  The complete chloroplast genome sequence of Dendrobium officinale , 2016, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

[2]  Wei Zhu,et al.  The complete chloroplast genome sequence of Sapindus mukorossi , 2014, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

[3]  W. Liu,et al.  Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications , 2014, PloS one.

[4]  Wei Zhu,et al.  The complete chloroplast genome sequence of Taxus chinensis var. mairei (Taxaceae): loss of an inverted repeat region and comparative analysis with related species. , 2014, Gene.

[5]  A. Salhi-Hannachi,et al.  Chloroplast DNA analysis in Tunisian date-palm cultivars (Phoenix dactylifera L.): Sequence variations and molecular evolution of trnL (UAA) intron and trnL (UAA) trnF (GAA) intergenic spacer , 2013 .

[6]  P. Adams.  Systematics of Dendrobiinae (Orchidaceae), with special reference to Australian taxa , 2011 .

[7]  L. Duan,et al.  In situ seed baiting techniques in Dendrobium officinale Kimuraet Migo and Dendrobium nobile Lindl. : the endangered Chinese endemic Dendrobium (Orchidaceae) , 2011 .

[8]  Baraket Ghada,et al.  Molecular evolution of chloroplast DNA in fig (Ficus carica L.): Footprints of sweep selection and recent expansion , 2010 .

[9]  H. Daniell,et al.  Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae , 2010, BMC Plant Biology.

[10]  H. Daniell,et al.  Plant-made vaccine antigens and biopharmaceuticals , 2009, Trends in Plant Science.

[11]  Z. Hui,et al.  Research progress of sugarcane chloroplast genome. , 2013 .

[12]  H. Mewes,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2004 .