XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons
暂无分享,去创建一个
[1] Mingfeng Li,et al. Temporal Specification and Bilaterality of Human Neocortical Topographic Gene Expression , 2014, Neuron.
[2] Michael P Snyder,et al. High-throughput sequencing for biology and medicine , 2013, Molecular systems biology.
[3] C. Burge,et al. Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues , 2012, Science.
[4] Evgeny M. Zdobnov,et al. OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs , 2012, Nucleic Acids Res..
[5] David Haussler,et al. The UCSC genome browser and associated tools , 2012, Briefings Bioinform..
[6] Michael C. Schatz,et al. Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score , 2012, Bioinform..
[7] Y. Gilad,et al. Comparative studies of gene expression and the evolution of gene regulation , 2012, Nature Reviews Genetics.
[8] David G. Knowles,et al. Fast Computation and Applications of Genome Mappability , 2012, PloS one.
[9] Damian Szklarczyk,et al. eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges , 2011, Nucleic Acids Res..
[10] Gautier Koscielny,et al. Ensembl 2012 , 2011, Nucleic Acids Res..
[11] J. Kleinman,et al. Spatiotemporal transcriptome of the human brain , 2011, Nature.
[12] T. Gingeras,et al. Synthetic spike-in standards for RNA-seq experiments. , 2011, Genome research.
[13] Mark Gerstein,et al. Bioinformatics Applications Note Gene Expression Rseqtools: a Modular Framework to Analyze Rna-seq Data Using Compact, Anonymized Data Summaries , 2022 .
[14] Dan Wang,et al. A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species , 2010, Nucleic Acids Res..
[15] Na Li,et al. Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq , 2010, PLoS Comput. Biol..
[16] M. Stephens,et al. Sex-specific and lineage-specific alternative splicing in primates. , 2010, Genome research.
[17] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[18] David N. Messina,et al. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome , 2007, Science.
[19] Jean L. Chang,et al. Initial sequence of the chimpanzee genome and comparison with the human genome , 2005, Nature.
[20] M. Kollmar,et al. Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins , 2003, BMC Genomics.
[21] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[22] M. King,et al. Evolution at two levels in humans and chimpanzees. , 1975, Science.
[23] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[24] A. Nieters,et al. Differential expression analysis for sequence count data , 2011 .
[25] David N. Messina,et al. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome , 2007 .
[26] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.