Eleven Telomere, Epigenetic Clock, and Biomarker-Composite Quantifications of Biological Aging: Do They Measure the Same Thing?

The geroscience hypothesis posits that therapies to slow biological processes of aging can prevent disease and extend healthy years of life. To test such "geroprotective" therapies in humans, outcome measures are needed that can assess extension of disease-free life span. This need has spurred development of different methods to quantify biological aging. But different methods have not been systematically compared in the same humans. We implemented 7 methods to quantify biological aging using repeated-measures physiological and genomic data in 964 middle-aged humans in the Dunedin Study (New Zealand; persons born 1972-1973). We studied 11 measures in total: telomere-length and erosion, 3 epigenetic-clocks and their ticking rates, and 3 biomarker-composites. Contrary to expectation, we found low agreement between different measures of biological aging. We next compared associations between biological aging measures and outcomes that geroprotective therapies seek to modify: physical functioning, cognitive decline, and subjective signs of aging, including aged facial appearance. The 71-cytosine-phosphate-guanine epigenetic clock and biomarker composites were consistently related to these aging-related outcomes. However, effect sizes were modest. Results suggested that various proposed approaches to quantifying biological aging may not measure the same aspects of the aging process. Further systematic evaluation and refinement of measures of biological aging is needed to furnish outcomes for geroprotector trials.

[1]  W. Wagner,et al.  Epigenetic Aging Signatures Are Coherently Modified in Cancer , 2015, PLoS genetics.

[2]  D. Belsky,et al.  Change in the Rate of Biological Aging in Response to Caloric Restriction: CALERIE Biobank Analysis , 2017, The journals of gerontology. Series A, Biological sciences and medical sciences.

[3]  Kenneth Rockwood,et al.  Heterogeneity of Human Aging and Its Assessment , 2016, The journals of gerontology. Series A, Biological sciences and medical sciences.

[4]  S Jay Olshansky,et al.  Substantial health and economic returns from delayed aging may warrant a new focus for medical research. , 2013, Health affairs.

[5]  O. Wolkowitz,et al.  Stress and telomere biology: A lifespan perspective , 2013, Psychoneuroendocrinology.

[6]  M. Levine,et al.  An epigenetic clock analysis of race/ethnicity, sex, and coronary heart disease , 2016, Genome Biology.

[7]  T. Ideker,et al.  Genome-wide methylation profiles reveal quantitative views of human aging rates. , 2013, Molecular cell.

[8]  M. Levine,et al.  DNA methylation-based measures of biological age: meta-analysis predicting time to death , 2016, Aging.

[9]  M. Jeanpierre A rapid method for the purification of DNA from blood. , 1987, Nucleic acids research.

[10]  A. Newman,et al.  Do changes in circulating biomarkers track with each other and with functional changes in older adults? , 2014, The journals of gerontology. Series A, Biological sciences and medical sciences.

[11]  B. Kennedy,et al.  Medical research: Treat ageing , 2014, Nature.

[12]  E. Schadt,et al.  Geroscience: Linking Aging to Chronic Disease , 2014, Cell.

[13]  Ian J. Deary,et al.  DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy , 2016, Aging.

[14]  L. Ferrucci,et al.  Homeostatic dysregulation proceeds in parallel in multiple physiological systems , 2015, Aging cell.

[15]  Paola Sebastiani,et al.  Biomarker signatures of aging , 2017, Aging cell.

[16]  J. Kirkland Translating the Science of Aging into Therapeutic Interventions. , 2016, Cold Spring Harbor perspectives in medicine.

[17]  D. Hernandez,et al.  The reported healthy ageing gene expression score: lack of association in two cohorts , 2015, bioRxiv.

[18]  Manuel Serrano,et al.  The Hallmarks of Aging , 2013, Cell.

[19]  J. Mortimer,et al.  Handbook of the life course , 2003 .

[20]  V. Mathiowetz,et al.  Grip and pinch strength: normative data for adults. , 1985, Archives of physical medicine and rehabilitation.

[21]  D. Belsky,et al.  The Longitudinal Study of Aging in Human Young Adults: Knowledge Gaps and Research Agenda , 2017, The journals of gerontology. Series A, Biological sciences and medical sciences.

[22]  S. Beach,et al.  Family-centered prevention ameliorates the longitudinal association between risky family processes and epigenetic aging. , 2016, Journal of child psychology and psychiatry, and allied disciplines.

[23]  W. Sturm,et al.  Neuropsychological assessment , 2007, Journal of Neurology.

[24]  Steven Truijen,et al.  Clinical assessment of balance: Normative data, and gender and age effects , 2008, International journal of audiology.

[25]  Suzanne G. Leveille,et al.  Midlife hand grip strength as a predictor of old age disability. , 1999, JAMA.

[26]  M. Levine,et al.  A comparison of methods for assessing mortality risk , 2014, American journal of human biology : the official journal of the Human Biology Council.

[27]  Richie Poulton,et al.  The Dunedin Multidisciplinary Health and Development Study: overview of the first 40 years, with an eye to the future , 2015, Social Psychiatry and Psychiatric Epidemiology.

[28]  D. Belsky,et al.  Perinatal Complications and Aging Indicators by Midlife , 2014, Pediatrics.

[29]  S. Olshansky Has the Rate of Human Aging Already Been Modified? , 2015, Cold Spring Harbor perspectives in medicine.

[30]  H. Brenner,et al.  Epigenetic age acceleration predicts cancer, cardiovascular, and all-cause mortality in a German case cohort , 2016, Clinical Epigenetics.

[31]  D. Belsky,et al.  Impact of early personal‐history characteristics on the Pace of Aging: implications for clinical trials of therapies to slow aging and extend healthspan , 2017, Aging cell.

[32]  N. Fox,et al.  Telomere length and early severe social deprivation: linking early adversity and cellular aging , 2012, Molecular Psychiatry.

[33]  B. Springer,et al.  Normative Values for the Unipedal Stance Test with Eyes Open and Closed , 2007, Journal of geriatric physical therapy.

[34]  M. Vinciguerra,et al.  Interventions to Slow Aging in Humans: Are We Ready? , 2015, Aging cell.

[35]  A. Hofman,et al.  Leukocyte telomere length associates with prospective mortality independent of immune-related parameters and known genetic markers , 2014, International journal of epidemiology.

[36]  R. Cawthon Telomere measurement by quantitative PCR. , 2002, Nucleic acids research.

[37]  Reply to Newman: Quantification of biological aging in young adults is not the same thing as the onset of obesity , 2015, Proceedings of the National Academy of Sciences.

[38]  M. Levine Modeling the rate of senescence: can estimated biological age predict mortality more accurately than chronological age? , 2013, The journals of gerontology. Series A, Biological sciences and medical sciences.

[39]  Steve Horvath,et al.  Obesity accelerates epigenetic aging of human liver , 2014, Proceedings of the National Academy of Sciences.

[40]  A. Caspi,et al.  Internalizing disorders and leukocyte telomere erosion: a prospective study of depression, generalized anxiety disorder and post-traumatic stress disorder , 2014, Molecular Psychiatry.

[41]  Saiful Islam,et al.  Mahalanobis Distance , 2009, Encyclopedia of Biometrics.

[42]  A. Yashin,et al.  Heterogeneity's ruses: some surprising effects of selection on population dynamics. , 1985, The American statistician.

[43]  Eileen M. Crimmins,et al.  Inflammatory Exposure and Historical Changes in Human Life-Spans , 2004, Science.

[44]  Matt Kaeberlein,et al.  A review of the biomedical innovations for healthy longevity , 2017, Aging.

[45]  L. Ferrucci,et al.  Detection of a Novel, Integrative Aging Process Suggests Complex Physiological Integration , 2015, PloS one.

[46]  D. Bowtell,et al.  Rapid isolation of eukaryotic DNA. , 1987, Analytical biochemistry.

[47]  L. Fried Interventions for Human Frailty: Physical Activity as a Model. , 2016, Cold Spring Harbor perspectives in medicine.

[48]  Kaare Christensen,et al.  Perceived age as clinically useful biomarker of ageing: cohort study , 2009, BMJ : British Medical Journal.

[49]  Karen Bandeen-Roche,et al.  A novel statistical approach shows evidence for multi-system physiological dysregulation during aging , 2013, Mechanisms of Ageing and Development.

[50]  Alex Zhavoronkov,et al.  Developing criteria for evaluation of geroprotectors as a key stage toward translation to the clinic , 2016, Aging cell.

[51]  D. Belsky,et al.  The Genetics of Success: How Single- Nucleotide Polymorphisms Associated With Educational Attainment Relate to Life-Course Development , 2016 .

[52]  D. Belsky,et al.  Quantification of biological aging in young adults , 2015, Proceedings of the National Academy of Sciences.

[53]  M. Levine,et al.  Evidence of accelerated aging among African Americans and its implications for mortality. , 2014, Social science & medicine.

[54]  R W Bohannon,et al.  Decrease in timed balance test scores with aging. , 1984, Physical therapy.

[55]  M. Lezak,et al.  Neuropsychological assessment, 4th ed. , 2004 .

[56]  E. Epel,et al.  Human telomere biology: A contributory and interactive factor in aging, disease risks, and protection , 2015, Science.

[57]  John B. Shoven,et al.  I , Edinburgh Medical and Surgical Journal.

[58]  D. Belsky,et al.  Polygenic risk and the developmental progression to heavy, persistent smoking and nicotine dependence: evidence from a 4-decade longitudinal study. , 2013, JAMA psychiatry.

[59]  D. Wechsler Wechsler Intelligence Scale for Children , 2020, Definitions.

[60]  J. Vaupel,et al.  DNA methylation age is associated with mortality in a longitudinal Danish twin study , 2015, Aging cell.

[61]  J. Vaupel,et al.  Telomere length and mortality: a study of leukocytes in elderly Danish twins. , 2008, American journal of epidemiology.

[62]  A. Caspi,et al.  Exposure to violence during childhood is associated with telomere erosion from 5 to 10 years of age: a longitudinal study , 2013, Molecular Psychiatry.

[63]  M. Kaeberlein Longevity and aging , 2013, F1000prime reports.

[64]  L. Fried,et al.  Frailty in older adults: evidence for a phenotype. , 2001, The journals of gerontology. Series A, Biological sciences and medical sciences.

[65]  Petr Klemera,et al.  A new approach to the concept and computation of biological age , 2006, Mechanisms of Ageing and Development.

[66]  Steve Horvath,et al.  The epigenetic clock is correlated with physical and cognitive fitness in the Lothian Birth Cohort 1936 , 2015, International journal of epidemiology.

[67]  Maja O’Connor LONGITUDINAL STUDY , 2013 .

[68]  M. Kobor,et al.  DNA methylation and healthy human aging , 2015, Aging cell.

[69]  Raimund Erbel,et al.  Aging of blood can be tracked by DNA methylation changes at just three CpG sites , 2014, Genome Biology.

[70]  M. Hayward,et al.  Does the Body Forget? Adult Health, Life Course Dynamics, and Social Change , 2016 .

[71]  K. Cherry,et al.  The frailty index outperforms DNA methylation age and its derivatives as an indicator of biological age , 2017, GeroScience.

[72]  S. Horvath,et al.  DNA methylation age of blood predicts all-cause mortality in later life , 2015, Genome Biology.

[73]  A. Mitnitski,et al.  Biological age revisited. , 2014, The journals of gerontology. Series A, Biological sciences and medical sciences.

[74]  E. Epel Science Current Directions in Psychological Telomeres in a Life-span Perspective : a New ''psychobiomarker''? on Behalf Of: Association for Psychological Science , 2022 .

[75]  Tom R. Gaunt,et al.  Prenatal and early life influences on epigenetic age in children: a study of mother–offspring pairs from two cohort studies , 2015, Human molecular genetics.

[76]  Is the onset of obesity the same as aging? , 2015, Proceedings of the National Academy of Sciences.

[77]  N. Goldman,et al.  Beyond Self-Reports: Changes in Biomarkers as Predictors of Mortality. , 2014, Population and development review.

[78]  Qunyuan Zhang,et al.  Heritability of and mortality prediction with a longevity phenotype: the healthy aging index. , 2014, The journals of gerontology. Series A, Biological sciences and medical sciences.

[79]  S. Horvath DNA methylation age of human tissues and cell types , 2013, Genome Biology.