Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling.
暂无分享,去创建一个
[1] K. Chater,et al. Alternative oxygen‐dependent and oxygen‐independent ribonucleotide reductases in Streptomyces: cross‐regulation and physiological role in response to oxygen limitation , 2004, Molecular microbiology.
[2] W. Wasserman,et al. Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus. , 2004, Genome research.
[3] P. Bork,et al. Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs , 2004, Nature Biotechnology.
[4] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[5] Peer Bork,et al. Global analysis of bacterial transcription factors to predict cellular target processes. , 2004, Trends in genetics : TIG.
[6] G. Glazko,et al. Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns , 2004, Genome Biology.
[7] M. Gelfand,et al. Comparative Genomics of the Vitamin B12 Metabolism and Regulation in Prokaryotes* , 2003, Journal of Biological Chemistry.
[8] T. Atlung,et al. FNR-Mediated Oxygen-Responsive Regulation of the nrdDG Operon of Escherichia coli , 2003, Journal of bacteriology.
[9] Webb Miller,et al. EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae , 2003, Nucleic Acids Res..
[10] Rodrigo Lopez,et al. Multiple sequence alignment with the Clustal series of programs , 2003, Nucleic Acids Res..
[11] Michael Kaufmann,et al. EPPS: mining the COG database by an extended phylogenetic patterns search , 2003, Bioinform..
[12] E. Torrents,et al. Corynebacterium ammoniagenes class Ib ribonucleotide reductase: transcriptional regulation of an atypical genomic organization in the nrd cluster. , 2003, Microbiology.
[13] E. Koonin,et al. Potential genomic determinants of hyperthermophily. , 2003, Trends in genetics : TIG.
[14] R. Overbeek,et al. Missing genes in metabolic pathways: a comparative genomics approach. , 2003, Current opinion in chemical biology.
[15] S. Teichmann,et al. Functional determinants of transcription factors in Escherichia coli: protein families and binding sites. , 2003, Trends in genetics : TIG.
[16] Christian von Mering,et al. STRING: a database of predicted functional associations between proteins , 2003, Nucleic Acids Res..
[17] P. Aloy,et al. Ribonucleotide Reductases: Divergent Evolution of an Ancient Enzyme , 2002, Journal of Molecular Evolution.
[18] D. Smalley,et al. Aerobic-Type Ribonucleotide Reductase in the Anaerobe Bacteroides fragilis , 2002, Journal of bacteriology.
[19] A. Holmgren,et al. Streptomyces spp. contain class Ia and class II ribonucleotide reductases: expression analysis of the genes in vegetative growth. , 2002, Microbiology.
[20] Rachel Schreiber,et al. Analysis of Transcription of theStaphylococcus aureus Aerobic Class Ib and Anaerobic Class III Ribonucleotide Reductase Genes in Response to Oxygen , 2001, Journal of bacteriology.
[21] E. Koonin,et al. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. , 2001, Genome research.
[22] Michael Y. Galperin,et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..
[23] Warren C. Lathe,et al. Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. , 2000, Genome research.
[24] E. Koonin,et al. The ATP-cone: an evolutionarily mobile, ATP-binding regulatory domain. , 2000, Journal of molecular microbiology and biotechnology.
[25] E. Koonin,et al. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach. , 2000, Nucleic acids research.
[26] E. Koonin,et al. DNA-binding proteins and evolution of transcription regulation in the archaea. , 1999, Nucleic acids research.
[27] M S Gelfand,et al. Recognition of regulatory sites by genomic comparison. , 1999, Research in microbiology.
[28] D. Eisenberg,et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[29] R. Overbeek,et al. The use of gene clusters to infer functional coupling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[30] D. Hwang,et al. Effect of IciA protein on the expression of the nrd gene encoding ribonucleoside diphosphate reductase in E. coli , 1998, Molecular and General Genetics MGG.
[31] J. Fuchs,et al. Multiple cis‐acting sites positively regulate Escherichia coli nrd expression , 1998, Molecular microbiology.
[32] C. Moorehead. All rights reserved , 1997 .
[33] A. Albertini,et al. The Bacillus subtilis genes for ribonucleotide reductase are similar to the genes for the second class I NrdE/NrdF enzymes of Enterobacteriaceae. , 1996, Microbiology.
[34] J. Barbé,et al. Two different operons for the same function: comparison of the Salmonella typhimurium nrdAB and nrdEF genes. , 1995, Gene.
[35] Young-Soo Hong,et al. Cloning and Expression of the Heterodimeric Deoxyguanosine Kinase/Deoxyadenosine Kinase of Lactobacillus acidophilus R-26 (*) , 1995, The Journal of Biological Chemistry.
[36] P. Reichard,et al. From RNA to DNA, why so many ribonucleotide reductases? , 1993, Science.
[37] H Zimmermann,et al. 5'-Nucleotidase: molecular structure and functional aspects. , 1992, The Biochemical journal.