Engineering of the methylmalonyl-CoA metabolite node of Saccharopolyspora erythraea for increased erythromycin production.

Engineering of the methylmalonyl-CoA (mmCoA) metabolite node of the Saccharopolyspora erythraea wild-type strain through duplication of the mmCoA mutase (MCM) operon led to a 50% increase in erythromycin production in a high-performance oil-based fermentation medium. The MCM operon was carried on a 6.8kb DNA fragment in a plasmid which was inserted by homologous recombination into the S. erythraea chromosome. The fragment contained one uncharacterized gene, ORF1; three MCM related genes, mutA, mutB, meaB; and one gntR-family regulatory gene, mutR. Additional strains were constructed containing partial duplications of the MCM operon, as well as a knockout of ORF1. None of these strains showed any significant alteration in their erythromycin production profile. The combined results showed that increased erythromycin production only occurred in a strain containing a duplication of the entire MCM operon including mutR and a predicted stem-loop structure overlapping the 3' terminus of the mutR coding sequence.

[1]  William H. Cernota,et al.  Analysis of an 8.1-kb DNA Fragment Contiguous with the Erythromycin Gene Cluster of Saccharopolyspora erythraea in the eryCI-Flanking Region , 2002, Antimicrobial Agents and Chemotherapy.

[2]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[3]  Jonathan Kennedy,et al.  Metabolic engineering of Escherichia coli for improved 6-deoxyerythronolide B production , 2003, Journal of Industrial Microbiology and Biotechnology.

[4]  L. Malmberg,et al.  Kinetic analysis of cephalosporin biosynthesis in Streptomyces clavuligerus , 1991, Biotechnology and bioengineering.

[5]  E. Lander Array of hope , 1999, Nature Genetics.

[6]  I. Brikun,et al.  Effects of methylmalonyl-CoA mutase gene knockouts on erythromycin production in carbohydrate-based and oil-based fermentations of Saccharopolyspora erythraea , 2006, Journal of Industrial Microbiology and Biotechnology.

[7]  R. Potenz,et al.  Organization of a cluster of erythromycin genes in Saccharopolyspora erythraea , 1990, Journal of bacteriology.

[8]  J. Nielsen,et al.  Impact of 'ome' analyses on inverse metabolic engineering. , 2004, Metabolic engineering.

[9]  A. Demain,et al.  Genetic improvement of processes yielding microbial products. , 2006, FEMS microbiology reviews.

[10]  Richard H. Baltz,et al.  Genetic methods and strategies for secondary metabolite yield improvement in actinomycetes , 2001, Antonie van Leeuwenhoek.

[11]  C. Hutchinson,et al.  Genetic analysis of erythromycin production in Streptomyces erythreus , 1985, Journal of bacteriology.

[12]  C. Kao,et al.  Reverse engineering of industrial pharmaceutical-producing actinomycete strains using DNA microarrays. , 2004, Metabolic engineering.

[13]  I. Brikun,et al.  Engineering precursor flow for increased erythromycin production in Aeromicrobium erythreum. , 2004, Metabolic engineering.

[14]  Teri,et al.  Molecular Cloning A Laboratory Manual Second Edition Sambrook , 1989 .

[15]  C. Khosla,et al.  Cloning and heterologous expression of the epothilone gene cluster. , 2000, Science.

[16]  Arnold L. Demain,et al.  From natural products discovery to commercialization: a success story , 2006, Journal of Industrial Microbiology and Biotechnology.

[17]  Bruce D. Hammock,et al.  Metabolomics: building on a century of biochemistry to guide human health , 2005, Metabolomics.

[18]  A. Blanchard,et al.  Sequence to array: Probing the genome's secrets , 1996, Nature Biotechnology.

[19]  P. Bork,et al.  Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.

[20]  L. Tang,et al.  Genetic control of polyketide biosynthesis in the genusStreptomyces , 2004, Antonie van Leeuwenhoek.

[21]  J. Bailey,et al.  Genetic engineering of an industrial strain of Saccharopolyspora erythraea for stable expression of the Vitreoscilla haemoglobin gene (vhb). , 1998, Microbiology.

[22]  A. Aristidou,et al.  Metabolic Engineering in the -omics Era: Elucidating and Modulating Regulatory Networks , 2005, Microbiology and Molecular Biology Reviews.

[23]  Arnold L. Demain,et al.  Manual of Industrial Microbiology and Biotechnology , 1986 .

[24]  B. Birren,et al.  Sequencing and comparison of yeast species to identify genes and regulatory elements , 2003, Nature.

[25]  M. Lidstrom,et al.  Molecular characterization of a chromosomal region involved in the oxidation of acetyl-CoA to glyoxylate in the isocitrate-lyase-negative methylotroph Methylobacterium extorquens AM1. , 1996, Microbiology.

[26]  K. Chater,et al.  RNA 3'-tail synthesis in Streptomyces: in vitro and in vivo activities of RNase PH, the SCO3896 gene product and polynucleotide phosphorylase. , 2006, Microbiology.

[27]  Manor Askenazi,et al.  Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains , 2003, Nature Biotechnology.

[28]  B. Wilkinson,et al.  Identification and cloning of a type III polyketide synthase required for diffusible pigment biosynthesis in Saccharopolyspora erythraea ‡ , 2002, Molecular microbiology.

[29]  W. S. Hu,et al.  Precursor flux control through targeted chromosomal insertion of the lysine epsilon-aminotransferase (lat) gene in cephamycin C biosynthesis , 1993, Journal of bacteriology.

[30]  W. Stemmer,et al.  Genome shuffling leads to rapid phenotypic improvement in bacteria , 2002, Nature.

[31]  A. Jimenez,et al.  Optimization of gene expression in Streptomyces lividans by a transcription terminator. , 1987, Nucleic acids research.

[32]  R. Banerjee,et al.  Assembly and protection of the radical enzyme, methylmalonyl-CoA mutase, by its chaperone. , 2006, Biochemistry.

[33]  Yirong Li,et al.  Improvement of nikkomycin production by enhanced copy of sanU and sanV in Streptomyces ansochromogenes and characterization of a novel glutamate mutase encoded by sanU and sanV. , 2005, Metabolic engineering.

[34]  V. Vinci,et al.  Improvement of microbial strains and fermentation processes , 2000, Applied Microbiology and Biotechnology.

[35]  Eric S. Miller Cloning vectors, mutagenesis, and gene disruption (ermR) for the erythromycin-producing bacterium Aeromicrobium erythreum , 1991, Applied and Environmental Microbiology.

[36]  P. Leadlay Combinatorial Approaches to Polyketide Biosynthesis , 1998 .

[37]  C. Khosla,et al.  Process development and metabolic engineering for the overproduction of natural and unnatural polyketides. , 2001, Advances in biochemical engineering/biotechnology.

[38]  Gregory Stephanopoulos,et al.  Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets , 2005, Nature Biotechnology.