Genomics and Pediatric Research

In the past few years impressive amounts of DNA sequence have been generated from the genomes of many species. It is now safe to claim that a “finished” version of the human genome will be available by mid-2003, just 50 y after the structure of DNA was first described (a “draft” or fragmented version of the human genome sequence has been available since 2001). There has also been much hyperbole surrounding announcements that described these achievements, and their significance for biomedical research and the human condition. Through this commentary we will introduce the series “Genetics of Childhood Disease and Development” to the pediatric clinician and scientist and provide a review on the more exciting observations of the Human Genome Project (HGP). We also aim to temper some earlier statements that need further clarification, and to make predictions of where this new science might have its greatest impact. For additional reference, we have highlighted the relevant original or review articles on these topics. A thorough overview of facts, figures, slides, educational and media presentations, and the most comprehensive set of genome-related links can be found at the “Human Genome Project Information” site (http://www.ornl.gov/hgmis/).

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[2]  D. Gudbjartsson,et al.  A high-resolution recombination map of the human genome , 2002, Nature Genetics.

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[4]  R. Strohman,et al.  Maneuvering in the Complex Path from Genotype to Phenotype , 2002, Science.

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[9]  Y. Fukushima,et al.  Haploinsufficiency of NSD1 causes Sotos syndrome , 2002, Nature Genetics.

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[14]  E. Bell Tumour immunology: Dealing with tumours , 2001, Nature Reviews Immunology.

[15]  Stephen W. Scherer,et al.  A 1.5 million–base pair inversion polymorphism in families with Williams-Beuren syndrome , 2001, Nature Genetics.

[16]  R. Wilson,et al.  The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men , 2001, Nature Genetics.

[17]  S. Scherer,et al.  Discovery of the human genome sequence in the public and private databases , 2001, Current Biology.

[18]  R I Richards,et al.  Dynamic mutations: a decade of unstable expanded repeats in human genetic disease. , 2001, Human molecular genetics.

[19]  M. Daly,et al.  High-resolution haplotype structure in the human genome , 2001, Nature Genetics.

[20]  Tamim H. Shaikh,et al.  Segmental duplications: an 'expanding' role in genomic instability and disease , 2001, Nature Reviews Genetics.

[21]  S. Batalov,et al.  A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes , 2001, Cell.

[22]  Xavier Estivill,et al.  A Polymorphic Genomic Duplication on Human Chromosome 15 Is a Susceptibility Factor for Panic and Phobic Disorders , 2001, Cell.

[23]  K R Coombes,et al.  Cancer genomics: promises and complexities. , 2001, Clinical cancer research : an official journal of the American Association for Cancer Research.

[24]  L. Helmuth Map of the Human Genome 3.0 , 2001, Science.

[25]  T. Golub Genomic approaches to the pathogenesis of hematologic malignancy , 2001, Current opinion in hematology.

[26]  J S Leeder,et al.  Pharmacogenetics and pharmacogenomics. , 2001, Pediatric clinics of North America.

[27]  Mourad Sahbatou,et al.  Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease , 2001, Nature.

[28]  J A Eisen,et al.  Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss? , 2001, Science.

[29]  B. Trask,et al.  Segmental duplications: organization and impact within the current human genome project assembly. , 2001, Genome research.

[30]  M. Daly,et al.  A susceptibility locus for asthma-related traits on chromosome 7 revealed by genome-wide scan in a founder population , 2001, Nature Genetics.

[31]  J. Weber,et al.  Olfactory receptor-gene clusters, genomic-inversion polymorphisms, and common chromosome rearrangements. , 2001, American journal of human genetics.

[32]  S. Pääbo,et al.  The Human Genome and Our View of Ourselves , 2001, Science.

[33]  Leena Peltonen,et al.  Dissecting Human Disease in the Postgenomic Era , 2001, Science.

[34]  Timothy B. Stockwell,et al.  The Sequence of the Human Genome , 2001, Science.

[35]  M. Daly,et al.  A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms , 2001, Nature.

[36]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[37]  F. Collins,et al.  Implications of the Human Genome Project for medical science. , 2001, JAMA.

[38]  L. Pennacchio,et al.  Genomic strategies to identify mammalian regulatory sequences , 2001, Nature Reviews Genetics.

[39]  J. Venter,et al.  Whole genomes: the foundation of new biology and medicine. , 2000, Current opinion in biotechnology.

[40]  R. Olby Horticulture: the font for the baptism of genetics , 2000, Nature Reviews Genetics.

[41]  Tom H. Lindner,et al.  Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus , 2000, Nature Genetics.

[42]  A. Roses Pharmacogenetics and the practice of medicine , 2000, Nature.

[43]  S. Antonarakis,et al.  OMIM passes the 1,000-disease-gene mark , 2000, Nature Genetics.

[44]  Eugene W. Myers,et al.  A whole-genome assembly of Drosophila. , 2000, Science.

[45]  P. George-Hyslop Molecular genetics of Alzheimer’s disease , 2000, Biological Psychiatry.

[46]  S. O’Brien,et al.  The promise of comparative genomics in mammals. , 1999, Science.

[47]  M. King,et al.  Genomic Views of Human History , 1999 .

[48]  M. Relling,et al.  Pharmacogenomics: translating functional genomics into rational therapeutics. , 1999, Science.

[49]  Andrew Smith Genome sequence of the nematode C-elegans: A platform for investigating biology , 1998 .

[50]  W. Kuo,et al.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays , 1998, Nature Genetics.

[51]  H. Kazazian,et al.  Mobile elements and disease. , 1998, Current opinion in genetics & development.

[52]  James L. Winkler,et al.  Accessing Genetic Information with High-Density DNA Arrays , 1996, Science.

[53]  E. Koonin,et al.  A minimal gene set for cellular life derived by comparison of complete bacterial genomes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Cécile Fizames,et al.  A comprehensive genetic map of the human genome based on 5,264 microsatellites , 1996, Nature.

[55]  M V Olson,et al.  The human genome project. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Brooks Jd Retreat of the triplet repeat , 1993 .

[57]  A. Joyner,et al.  A mouse model of Greig cephalo–polysyndactyly syndrome: the extra–toesJ mutation contains an intragenic deletion of the Gli3 gene , 1993, Nature Genetics.

[58]  F. Collins,et al.  Positional cloning: Let's not call it reverse anymore , 1992, Nature Genetics.

[59]  A. Monaco,et al.  Cloning the gene for an inherited human disorder—chronic granulomatous disease—on the basis of its chromosomal location , 1986, Nature.

[60]  H. Green,et al.  Alterations leading to increased ribonucleotide reductase in cells selected for resistance to deoxynucleosides. , 1974, Cell.

[61]  P. Corey,et al.  Incidence of Adverse Drug Reactions in Hospitalized Patients , 2012 .

[62]  Christopher J. Lee,et al.  A genomic view of alternative splicing , 2002, Nature Genetics.

[63]  E. Eichler,et al.  Segmental duplications and the evolution of the primate genome , 2002, Nature Reviews Genetics.

[64]  M. D. Brennan High Throughput Genotyping Technologies for Pharmacogenomics , 2001, American journal of pharmacogenomics : genomics-related research in drug development and clinical practice.

[65]  T. Triche,et al.  DNA microarrays in pediatric cancer. , 2001, Cancer journal.