Zinc drives a tertiary fold in the prion protein with familial disease mutation sites at the interface.

The cellular prion protein PrP(C) consists of two domains--a flexible N-terminal domain, which participates in copper and zinc regulation, and a largely helical C-terminal domain that converts to β sheet in the course of prion disease. These two domains are thought to be fully independent and noninteracting. Compelling cellular and biophysical studies, however, suggest a higher order structure that is relevant to both PrP(C) function and misfolding in disease. Here, we identify a Zn²⁺-driven N-terminal to C-terminal tertiary interaction in PrP(C). The C-terminal surface participating in this interaction carries the majority of the point mutations that confer familial prion disease. Investigation of mutant PrPs finds a systematic relationship between the type of mutation and the apparent strength of this domain structure. The structural features identified here suggest mechanisms by which physiologic metal ions trigger PrP(C) trafficking and control prion disease.

[1]  A. Aguzzi,et al.  The prion's elusive reason for being. , 2008, Annual review of neuroscience.

[2]  D. Harris,et al.  Copper Stimulates Endocytosis of the Prion Protein* , 1998, The Journal of Biological Chemistry.

[3]  Stanley B. Prusiner,et al.  Nobel Lecture: Prions , 1998 .

[4]  G. Jeschke,et al.  Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance. , 2007, Physical chemistry chemical physics : PCCP.

[5]  P Brown,et al.  Fatal familial insomnia and familial Creutzfeldt-Jakob disease: disease phenotype determined by a DNA polymorphism. , 1992, Science.

[6]  W. L. Jorgensen,et al.  Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids , 1996 .

[7]  E. Masliah,et al.  Disruption of copper homeostasis due to a mutation of Atp7a delays the onset of prion disease , 2012, Proceedings of the National Academy of Sciences.

[8]  E. Walter,et al.  The prion protein is a combined zinc and copper binding protein: Zn2+ alters the distribution of Cu2+ coordination modes. , 2007, Journal of the American Chemical Society.

[9]  T. Pollard,et al.  A conserved amphipathic helix in WASP/Scar proteins is essential for activation of Arp2/3 complex , 2003, Nature Structural Biology.

[10]  H. Berendsen,et al.  Molecular dynamics with coupling to an external bath , 1984 .

[11]  S. Supattapone,et al.  Copper (II) ions potently inhibit purified PrPres amplification , 2006, Journal of neurochemistry.

[12]  Peter G Schultz,et al.  An enhanced system for unnatural amino acid mutagenesis in E. coli. , 2010, Journal of molecular biology.

[13]  Nathan A. Baker,et al.  Electrostatics of nanosystems: Application to microtubules and the ribosome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[14]  Liang Shen,et al.  Mutation directional selection sheds light on prion pathogenesis. , 2011, Biochemical and biophysical research communications.

[15]  S. Prusiner,et al.  Prion biology and diseases. , 1999, Harvey lectures.

[16]  J. Plavec,et al.  NMR Structure of the Human Prion Protein with the Pathological Q212P Mutation Reveals Unique Structural Features , 2010, PloS one.

[17]  Eliah Aronoff-Spencer,et al.  Molecular features of the copper binding sites in the octarepeat domain of the prion protein. , 2002, Biochemistry.

[18]  E. Walter,et al.  The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4. , 2005, Journal of the American Chemical Society.

[19]  N. Hooper,et al.  Ablation of the metal ion-induced endocytosis of the prion protein by disease-associated mutation of the octarepeat region , 2001, Current Biology.

[20]  R. Gabizon,et al.  Copper is toxic to PrP-ablated mice and exacerbates disease in a mouse model of E200K genetic prion disease , 2012, Neurobiology of Disease.

[21]  J. Collinge,et al.  Location and properties of metal-binding sites on the human prion protein , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[22]  D. van der Spoel,et al.  GROMACS: A message-passing parallel molecular dynamics implementation , 1995 .

[23]  K Wüthrich,et al.  NMR solution structure of the human prion protein. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[24]  C. V. Mering,et al.  Prion Protein Devoid of the Octapeptide Repeat Region Restores Susceptibility to Scrapie in PrP Knockout Mice , 2000, Neuron.

[25]  H. Berendsen,et al.  Interaction Models for Water in Relation to Protein Hydration , 1981 .

[26]  G. Chillemi,et al.  Effects of the pathological Q212P mutation on human prion protein non-octarepeat copper-binding site. , 2012, Biochemistry.

[27]  S. Mead,et al.  Prion disease genetics , 2006, European Journal of Human Genetics.

[28]  P E Wright,et al.  Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexible. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[29]  D. Westaway,et al.  Evolutionary Descent of Prion Genes from the ZIP Family of Metal Ion Transporters , 2009, PloS one.

[30]  G. Millhauser Copper and the prion protein: methods, structures, function, and disease. , 2007, Annual review of physical chemistry.

[31]  J. Plavec,et al.  Toward the molecular basis of inherited prion diseases: NMR structure of the human prion protein with V210I mutation. , 2011, Journal of molecular biology.

[32]  R J Fletterick,et al.  Structural clues to prion replication. , 1994, Science.

[33]  William L. Jorgensen,et al.  Free Energies of Hydration and Pure Liquid Properties of Hydrocarbons from the OPLS All-Atom Model , 1994 .

[34]  Gerhard Klebe,et al.  PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations , 2007, Nucleic Acids Res..

[35]  O. Bocharova,et al.  Copper(II) inhibits in vitro conversion of prion protein into amyloid fibrils. , 2005, Biochemistry.

[36]  S. Plotkin,et al.  Immunological mimicry of PrPC-PrPSc interactions: antibody-induced PrP misfolding. , 2009, Protein engineering, design & selection : PEDS.

[37]  W. Surewicz,et al.  Solution Structure of the E200K Variant of Human Prion Protein , 2000, The Journal of Biological Chemistry.

[38]  E. Walter,et al.  Copper binding extrinsic to the octarepeat region in the prion protein. , 2009, Current protein & peptide science.

[39]  N. Hooper,et al.  Mechanism of the metal-mediated endocytosis of the prion protein. , 2008, Biochemical Society transactions.

[40]  N. Inestrosa,et al.  Induction of cellular prion protein gene expression by copper in neurons. , 2006, American journal of physiology. Cell physiology.

[41]  S. Prusiner,et al.  Copper coordination in the full-length, recombinant prion protein. , 2003, Biochemistry.

[42]  R. Shin,et al.  Codon 219 lys allele of PRNP is not found in sporadic Creutzfeldt‐Jakob disease , 1998, Annals of neurology.

[43]  S. Prusiner,et al.  Prion proteins with pathogenic and protective mutations show similar structure and dynamics. , 2009, Biochemistry.

[44]  W. Surewicz,et al.  Conformational diversity in prion protein variants influences intermolecular β‐sheet formation , 2010, The EMBO journal.

[45]  F. Cohen,et al.  Proposed three-dimensional structure for the cellular prion protein. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[46]  C. Altenbach,et al.  Sugar binding induces an outward facing conformation of LacY , 2007, Proceedings of the National Academy of Sciences.

[47]  N. Hooper,et al.  Prion protein facilitates uptake of zinc into neuronal cells , 2012, Nature Communications.

[48]  A. Srivastava,et al.  Copper Alters Aggregation Behavior of Prion Protein and Induces Novel Interactions between Its N- and C-terminal Regions , 2011, The Journal of Biological Chemistry.

[49]  C. Masters,et al.  Regulation of Prion Gene Expression by Transcription Factors SP1 and Metal Transcription Factor-1* , 2009, Journal of Biological Chemistry.

[50]  Francis B. Peters,et al.  Site-directed spin labeling of a genetically encoded unnatural amino acid , 2009, Proceedings of the National Academy of Sciences.

[51]  N. Hooper,et al.  The prion protein and neuronal zinc homeostasis. , 2003, Trends in biochemical sciences.

[52]  D. Westaway,et al.  The cellular prion protein binds copper in vivo , 1997, Nature.

[53]  K. Roth,et al.  Neonatal lethality in transgenic mice expressing prion protein with a deletion of residues 105–125 , 2007, The EMBO journal.

[54]  A. Aguzzi,et al.  Lethal recessive myelin toxicity of prion protein lacking its central domain , 2007, The EMBO journal.

[55]  W. Surewicz,et al.  Familial Mutations and the Thermodynamic Stability of the Recombinant Human Prion Protein* , 1998, The Journal of Biological Chemistry.

[56]  K. Hideg,et al.  Nitroxyls; VIII1. Synthesis of Nitroxylphosphinimines; A Convenient Route to Amine, Isothiocyanate, Aminocarbonylaziridine, and Carbodiimide Nitroxyls , 1981 .

[57]  Berk Hess,et al.  GROMACS 3.0: a package for molecular simulation and trajectory analysis , 2001 .

[58]  H. Zimmermann,et al.  DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data , 2006 .

[59]  S. Prusiner,et al.  Prion diseases and the BSE crisis. , 1997, Science.

[60]  F. Jirik,et al.  Prion protein expression level alters regional copper, iron and zinc content in the mouse brain. , 2011, Metallomics : integrated biometal science.

[61]  R. Glockshuber,et al.  Influence of amino acid substitutions related to inherited human prion diseases on the thermodynamic stability of the cellular prion protein. , 1999, Biochemistry.