Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia

[1]  M. Jobling,et al.  Evaluation of Y-chromosomal STRs: a multicenter study , 1997, International Journal of Legal Medicine.

[2]  O. Zhukova,et al.  Russian ethnic history inferred from mitochondrial DNA diversity. , 2012, American journal of physical anthropology.

[3]  M. Ashburner.  A Laboratory manual , 1989 .

[4]  Maido Remm,et al.  Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia. , 2011, American journal of human genetics.

[5]  Peter A Underhill,et al.  New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. , 2008, Genome research.

[6]  H. Bandelt,et al.  Origin and evolution of Native American mtDNA variation: a reappraisal. , 1996, American journal of human genetics.

[7]  Y. Kuzmin,et al.  Radiocarbon Date Frequency as an Index of Intensity of Paleolithic Occupation of Siberia: Did Humans React Predictably to Climate Oscillations? , 2007, Radiocarbon.

[8]  David B. Witonsky,et al.  Reconstructing Native American Population History , 2012, Nature.

[9]  D. Reich,et al.  Population Structure and Eigenanalysis , 2006, PLoS genetics.

[10]  O. Gokcumen,et al.  Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians. , 2012, American journal of human genetics.

[11]  B. Malyarchuk,et al.  Origin and Post-Glacial Dispersal of Mitochondrial DNA Haplogroups C and D in Northern Asia , 2010, PloS one.

[12]  David H. Alexander,et al.  Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.

[13]  M. Ruhlen.  A Guide to the World’s Languages , 1987 .

[14]  E. Khusnutdinova,et al.  Complete Mitochondrial DNA Analysis of Eastern Eurasian Haplogroups Rarely Found in Populations of Northern Asia and Eastern Europe , 2012, PloS one.

[15]  M. Rieder,et al.  Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome. , 1998, Nucleic acids research.

[16]  T. Goebel,et al.  The Archaeology of Ushki Lake, Kamchatka, and the Pleistocene Peopling of the Americas , 2003, Science.

[17]  A. Krogh,et al.  Ancient human genome sequence of an extinct Palaeo-Eskimo , 2010, Nature.

[18]  M. Hammer,et al.  Ancestral Asian source(s) of new world Y-chromosome founder haplotypes. , 1999, American journal of human genetics.

[19]  Daniel Nettle,et al.  Genetic and Linguistic Affinities between Human Populations in Eurasia and West Africa , 2003, Human biology.

[20]  B. Malyarchuk,et al.  Phylogeography of the Y‐chromosome haplogroup C in northern Eurasia , 2010, Annals of human genetics.

[21]  Yakutia before its incorporation into the Russian state , 1972 .

[22]  C. Lalueza-Fox,et al.  Tracing the Origin of the East-West Population Admixture in the Altai Region (Central Asia) , 2012, PloS one.

[23]  J. Dipierri,et al.  Beringian Standstill and Spread of Native American Founders , 2007, PloS one.

[24]  Y. Kuzmin.  Siberia at the Last Glacial Maximum: Environment and Archaeology , 2008 .

[25]  B. Malyarchuk,et al.  Contrasting patterns of Y-chromosome variation in South Siberian populations from Baikal and Altai-Sayan regions , 2005, Human Genetics.

[26]  R. Villems,et al.  Phylogenetic analysis of ancient mitochondrial DNA lineages of human remains found in Yakutia , 2008, Molecular Biology.

[27]  E. Starikovskaya,et al.  Mitochondrial DNA Diversity in Indigenous Populations of the Southern Extent of Siberia, and the Origins of Native American Haplogroups , 2005, Annals of human genetics.

[28]  B. Su,et al.  Global distribution of Y-chromosome haplogroup C reveals the prehistoric migration routes of African exodus and early settlement in East Asia , 2010, Journal of Human Genetics.

[29]  Eric Crubézy,et al.  Ancient DNA provides new insights into the history of south Siberian Kurgan people , 2009, Human Genetics.

[30]  Suling Zhu,et al.  The genetic legacy of the Mongols. , 2003, American journal of human genetics.

[31]  Saharon Rosset,et al.  The genome-wide structure of the Jewish people , 2010, Nature.

[32]  Manfred Kayser,et al.  Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation , 2009, Human mutation.

[33]  B. Weir,et al.  ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.

[34]  R. Sukernik,et al.  Mitochondrial DNA variation in Koryaks and Itel'men: population replacement in the Okhotsk Sea-Bering Sea region during the Neolithic. , 1999, American journal of physical anthropology.

[35]  P. Underhill,et al.  A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe , 2007, European Journal of Human Genetics.

[36]  L. Krader.  Peoples of central Asia , 1971 .

[37]  M. Crawford,et al.  The Origins of the Yakut People: Evidence from Mitochondrial DNA Diversity , 2008 .

[38]  S. Rychkov,et al.  Differentiation of Mitochondrial DNA and Y Chromosomes in Russian Populations , 2004, Human biology.

[39]  R. Rosenfeld.  Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

[40]  Josyf Mychaleckyj,et al.  Robust relationship inference in genome-wide association studies , 2010, Bioinform..

[41]  Arne Röhl,et al.  Correcting for purifying selection: an improved human mitochondrial molecular clock. , 2009, American journal of human genetics.

[42]  L. Roewer,et al.  Rapid and sensitive typing of forensic stains by PCR amplification of polymorphic simple repeat sequences in case work. , 1992, Forensic science international.

[43]  B. Malyarchuk,et al.  Complex interactions of the Eastern and Western Slavic populations with other European groups as revealed by mitochondrial DNA analysis. , 2007, Forensic science international. Genetics.

[44]  C. Tyler-Smith,et al.  Genetic relationships of Asians and Northern Europeans, revealed by Y-chromosomal DNA analysis. , 1997, American journal of human genetics.

[45]  T. Goebel,et al.  The Late Pleistocene Dispersal of Modern Humans in the Americas , 2008, Science.

[46]  H. Bandelt,et al.  mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. , 2000, American journal of human genetics.

[47]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[48]  E. Starikovskaya,et al.  Mitochondrial genome diversity in arctic Siberians, with particular reference to the evolutionary history of Beringia and Pleistocenic peopling of the Americas. , 2008, American journal of human genetics.

[49]  C. Brenner,et al.  A western Eurasian male is found in 2000-year-old elite Xiongnu cemetery in Northeast Mongolia. , 2010, American journal of physical anthropology.

[50]  Pulamaghatta N. Venugopal,et al.  Updating Phylogeny of Mitochondrial DNA Macrohaplogroup M in India: Dispersal of Modern Human in South Asian Corridor , 2009, PloS one.

[51]  M. Metspalu,et al.  Paleo-Eskimo mtDNA Genome Reveals Matrilineal Discontinuity in Greenland , 2008, Science.

[52]  Bernard Comrie,et al.  The Languages of the Soviet Union , 1981 .

[53]  B. Malyarchuk,et al.  Mitochondrial DNA variability in Poles and Russians. , 2002, Annals of human genetics.

[54]  Giovanni Destro-Bisol,et al.  The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. , 2004, American journal of human genetics.

[55]  J V Neel,et al.  Asian affinities and continental radiation of the four founding Native American mtDNAs. , 1993, American journal of human genetics.

[56]  Analysis of Mitochondrial DNA Lineages in Yakuts , 2003, Molecular Biology.

[57]  H. Bandelt,et al.  Median-joining networks for inferring intraspecific phylogenies. , 1999, Molecular biology and evolution.

[58]  W. Parson,et al.  Human evolution in Siberia: from frozen bodies to ancient DNA , 2010, BMC Evolutionary Biology.

[59]  M. Hammer,et al.  A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers. , 2002, Forensic science international.

[60]  P. Melton,et al.  Comparative analysis of mitochondrial DNA of Yakuts and other Asian populations , 2006, Russian Journal of Genetics.

[61]  Y. Kuzmin,et al.  Radiocarbon-Based Chronology of the Paleolithic in Siberia and Its Relevance to the Peopling of the New World , 2002, Radiocarbon.

[62]  M. Feldman,et al.  Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .

[63]  Hidetoshi Shimodaira,et al.  Mitochondrial genome variation in eastern Asia and the peopling of Japan. , 2004, Genome research.

[64]  M. Stoneking,et al.  Mating patterns amongst Siberian reindeer herders: inferences from mtDNA and Y-chromosomal analyses. , 2007, American journal of physical anthropology.

[65]  F. Ricaut,et al.  Genetic analysis and ethnic affinities from two Scytho-Siberian skeletons. , 2004, American journal of physical anthropology.

[66]  L. Excoffier,et al.  Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows , 2010, Molecular ecology resources.

[67]  M. Stoneking,et al.  Mitochondrial DNA evidence for admixed origins of central Siberian populations. , 2003, American journal of physical anthropology.

[68]  D. Turnbull,et al.  Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA , 1999, Nature Genetics.

[69]  B. Malyarchuk,et al.  Ancient links between Siberians and Native Americans revealed by subtyping the Y chromosome haplogroup Q1a , 2011, Journal of Human Genetics.

[70]  R. Sukernik,et al.  Analysis of mitochondrial DNA diversity in the aleuts of the commander islands and its implications for the genetic history of beringia. , 2002, American journal of human genetics.

[71]  M. Fortescue.  The relationship of Nivkh to Chukotko-Kamchatkan revisited , 2011 .

[72]  R. J. Herrera,et al.  Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a , 2010, European Journal of Human Genetics.

[73]  T. Goebel.  Pleistocene human colonization of Siberia and peopling of the Americas: An ecological approach , 1999 .

[74]  F. Ricaut,et al.  Molecular genetic analysis of 400-year-old human remains found in two Yakut burial sites. , 2006, American journal of physical anthropology.

[75]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[76]  M. Stoneking,et al.  Y-chromosomal evidence for a strong reduction in male population size of Yakuts , 2002, Human Genetics.

[77]  Q. Kong,et al.  Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. , 2006, Human molecular genetics.

[78]  P. Rudan,et al.  Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia. , 2004, Molecular biology and evolution.

[79]  M. Stoneking,et al.  Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts , 2006, Human Genetics.

[80]  R. Villems,et al.  Phylogeographic analysis of mitochondrial DNA in northern Asian populations. , 2007, American journal of human genetics.

[81]  S. Rosset,et al.  Counting the Founders: The Matrilineal Genetic Ancestry of the Jewish Diaspora , 2008, PloS one.

[82]  M. Hammer,et al.  High Levels of Y-Chromosome Differentiation among Native Siberian Populations and the Genetic Signature of a Boreal Hunter-Gatherer Way of Life , 2002, Human biology.

[83]  Saharon Rosset,et al.  A "Copernican" reassessment of the human mitochondrial DNA tree from its root. , 2012, American journal of human genetics.

[84]  R. Villems,et al.  Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia: the Near Eastern and Caucasian perspective. , 2007, Molecular biology and evolution.

[85]  V. Pitulko,et al.  The Yana RHS Site: Humans in the Arctic Before the Last Glacial Maximum , 2004, Science.

[86]  P. Lewis.  Ethnologue : languages of the world , 2009 .

[87]  P. Donnelly,et al.  Inference of population structure using multilocus genotype data. , 2000, Genetics.

[88]  B. Malyarchuk,et al.  Y-chromosome haplogroup N dispersals from south Siberia to Europe , 2007, Journal of Human Genetics.