Quantification of plasma lipids and apolipoproteins by use of proton NMR spectroscopy, multivariate and neural network analysis

New approaches for quantification of human blood plasma lipids and apolipoproteins are presented. One method is based on multivariate analysis of proton nuclear magnetic resonance spectra of human blood plasma. Although similar approaches have been developed previously, this is the first time principal component analysis (PCA) and partial least squares regression (PLS) have been applied to this particular task. Further, a large proportion of the subjects in this study were cancer patients undergoing treatment, which introduced a new dimension to the quantification of lipoprotein distributions. Calibration models for prediction of lipids and apolipoproteins were constructed by use of PLS, and blind samples were used to test the predictive ability. Comparison of the predicted vs observed data obtained by standard clinical chemical procedures gave good agreement; the correlation coefficient for total plasma triglyceride was 0.99, for total plasma cholesterol 0.98, for LDL cholesterol 0.97, and for HDL cholesterol 0.88. These results are comparable with those obtained with other methods. The quantitative analysis of 14 components (including total cholesterol and total triglyceride) of human blood plasma was also undertaken using various neural network (NN) analyses of selected portions of the spectra. Conventional fully connected backpropagation neural network topologies were capable of providing excellent predictions for the majority of the variables, confirming and reinforcing literature related to this approach. However HDL triglycerides were poorly predicted, while intermediate‐quality results were obtained for the LDL cholesterol, plasma apoA1 and LDL apoB variables. In these instances, applying significantly different neural network algorithms involving either general regression or polynomial neural networks in combination with genetic adaptive components for parameter optimisation made improved predictions. Copyright © 2000 John Wiley & Sons, Ltd.

[1]  E. Sasse,et al.  Variability of lipid measurements: relevance for the clinician. , 1993, Clinical chemistry.

[2]  Timothy Masters,et al.  Advanced algorithms for neural networks: a C++ sourcebook , 1995 .

[3]  J. Krane,et al.  Principal component analysis of proton nuclear magnetic resonance spectra of lipoprotein fractions from patients with coronary heart disease and healthy subjects. , 1999, Scandinavian journal of clinical and laboratory investigation.

[4]  I Mader,et al.  In Vivo proton MR spectroscopy of human gliomas: definition of metabolic coordinates for multi‐dimensional classification , 1995, Magnetic resonance in medicine.

[5]  K. Bjerve,et al.  Characterization of plasma lipids in patients with malignant disease by 13C nuclear magnetic resonance spectroscopy and gas liquid chromatography. , 1995, Blood.

[6]  Peter Russell,et al.  Computerized Consensus Diagnosis: A Classification Strategy for the Robust Analysis of MR Spectra. I. Application to 1H Spectra of Thyroid Neoplasms , 1995, Magnetic resonance in medicine.

[7]  M Ala-Korpela,et al.  Lipoprotein-lipid quantification by neural-network analysis of 1H NMR data from human blood plasma. , 1995, Journal of magnetic resonance. Series B.

[8]  Jimmy D Bell,et al.  Assessment of quantitative artificial neural network analysis in a metabolically dynamic ex vivo 31p NMR pig liver study , 1997, Magnetic resonance in medicine.

[9]  A R Tate,et al.  Towards a method for automated classification of 1H MRS spectra from brain tumours , 1998, NMR in biomedicine.

[10]  D W Bennett,et al.  Quantification of plasma lipoproteins by proton nuclear magnetic resonance spectroscopy. , 1991, Clinical chemistry.

[11]  P. Wood,et al.  National Cholesterol Education Program recommendations for measurement of high-density lipoprotein cholesterol: executive summary. The National Cholesterol Education Program Working Group on Lipoprotein Measurement. , 1995, Clinical chemistry.

[12]  M. Schubert-Zsilavecz,et al.  Structure Investigation and Proton and Carbon‐13 Assignments of Digitonin and Cholesterol using Multidimensional NMR Techniques , 1996 .

[13]  E. DeLong,et al.  A comparison of methods for the estimation of plasma low- and very low-density lipoprotein cholesterol. The Lipid Research Clinics Prevalence Study. , 1986 .

[14]  E. Sasse,et al.  Variability in cholesterol measurements: comparison of calculated and direct LDL cholesterol determinations. , 1996, Clinical chemistry.

[15]  Y. Hiltunen,et al.  A comparative study of 1H NMR lineshape fitting analyses and biochemical lipid analyses of the lipoprotein fractions VLDL, LDL and HDL, and total human blood plasm , 1993, NMR in biomedicine.

[16]  Zbigniew Michalewicz,et al.  Genetic Algorithms + Data Structures = Evolution Programs , 1996, Springer Berlin Heidelberg.

[17]  J R Griffiths,et al.  Pattern recognition analysis of 1H NMR spectra from perchloric acid extracts of human brain tumor biopsies , 1998, Magnetic resonance in medicine.

[18]  A. Garfagnini,et al.  Relationship between HDL-cholesterol and apolipoprotein A1 and the severity of coronary artery disease. , 1995, European heart journal.

[19]  Jimmy D Bell,et al.  Quantification of biomedical NMR data using artificial neural network analysis: Lipoprotein lipid profiles from 1H NMR data of human plasma , 1995, NMR in biomedicine.

[20]  Truman R. Brown,et al.  Application of Principal-Component Analysis for NMR Spectral Quantitation , 1995 .

[21]  J. D. de Certaines,et al.  Quantification of plasma lipoprotein fractions by wavelet transform time‐domain data processing of the proton nuclear magnetic resonance methylene spectral region , 1998, NMR in biomedicine.

[22]  W. El-Deredy,et al.  Pattern recognition approaches in biomedical and clinical magnetic resonance spectroscopy: a review , 1997, NMR in biomedicine.

[23]  M. Mogadam,et al.  Within-person fluctuations of serum cholesterol and lipoproteins. , 1990, Archives of internal medicine.

[24]  Mika Ala-Korpela,et al.  1H NMR spectroscopy of human blood plasma , 1995 .

[25]  T Anderson,et al.  Relationships between the proton nuclear magnetic resonance properties of plasma lipoproteins and cancer. , 1991, Clinical chemistry.

[26]  Jan P. Radomski,et al.  Neural network–based recognition of oligosaccharide 1H-NMR spectra , 1994, Nature Structural Biology.

[27]  J. Lindon,et al.  Internal temperature calibration for 1H NMR spectroscopy studies of blood plasma and other biofluids , 1994, NMR in biomedicine.

[28]  R. Levy,et al.  Estimation of the concentration of low-density lipoprotein cholesterol in plasma, without use of the preparative ultracentrifuge. , 1972, Clinical chemistry.

[29]  R. Krauss,et al.  Intermediate-density lipoproteins and progression of carotid arterial wall intima-media thickness. , 1997, Circulation.

[30]  M Ala-Korpela,et al.  Automated classification of human brain tumours by neural network analysis using in vivo 1H magnetic resonance spectroscopic metabolite phenotypes. , 1996, Neuroreport.

[31]  K. Bjerve,et al.  Proton magnetic resonance spectroscopy of fractionated plasma lipoproteins and reconstituted plasma from healthy subjects and patients with cancer. , 1992, Scandinavian journal of clinical and laboratory investigation.

[32]  Theodoros N. Arvanitis,et al.  Automated feature extraction for the classification of human in vivo13C NMR spectra using statistical pattern recognition and wavelets , 1996, Magnetic resonance in medicine.

[33]  N. Olsen,et al.  Evaluation of muscle diseases using artificial neural network analysis of 31P MR spectroscopy data , 1995, Magnetic resonance in medicine.

[34]  G. Warnick,et al.  Accurate direct determination of low-density lipoprotein cholesterol using an immunoseparation reagent and enzymatic cholesterol assay. , 1995, Archives of pathology & laboratory medicine.

[35]  D. Freedman,et al.  Relation of lipoprotein subclasses as measured by proton nuclear magnetic resonance spectroscopy to coronary artery disease. , 1998, Arteriosclerosis, thrombosis, and vascular biology.

[36]  R. Siuda,et al.  Spurious principal components in the set of spectra subjected to disturbances: I. Presentation of the problem , 1998 .

[37]  M Ala-Korpela,et al.  1H NMR-based absolute quantitation of human lipoproteins and their lipid contents directly from plasma. , 1994, Journal of lipid research.

[38]  Y. Schouw,et al.  Apolipoprotein B and coronary artery disease in women: a cross-sectional study in women undergoing their first coronary angiography. , 1998, Arteriosclerosis, thrombosis, and vascular biology.

[39]  P. Gemperline,et al.  Spectroscopic calibration and quantitation using artificial neural networks , 1990 .

[40]  E. Stein,et al.  National Cholesterol Education Program recommendations for triglyceride measurement: executive summary. The National Cholesterol Education Program Working Group on Lipoprotein Measurement. , 1995, Clinical chemistry.

[41]  T R Brown,et al.  NMR spectral quantitation by principal-component analysis. II. Determination of frequency and phase shifts. , 1996, Journal of magnetic resonance. Series B.

[42]  David E. Goldberg,et al.  Genetic Algorithms in Search Optimization and Machine Learning , 1988 .

[43]  A Darvill,et al.  Identification of the 1H-NMR spectra of complex oligosaccharides with artificial neural networks , 1991, Science.

[44]  Einar Sletten,et al.  Detection of malignant tumours by multivariate analysis of proton magnetic resonance spectra of serum. , 1990, European journal of cancer.

[45]  T R Brown,et al.  Quantitation of Resonances in Biological 31P NMR Spectra via Principal Component Analysis: Potential and Limitations , 1996, NMR in biomedicine.

[46]  J. Marniemi,et al.  Poor applicability of the Friedewald formula in the assessment of serum LDL cholesterol for clinical purposes. , 1995, Clinical biochemistry.

[47]  S. J. Smith,et al.  Biological variability in concentrations of serum lipids: sources of variation among results from published studies and composite predicted values. , 1993, Clinical chemistry.

[48]  Tormod Næs,et al.  Selection of Samples for Calibration in Near-Infrared Spectroscopy. Part I: General Principles Illustrated by Example , 1989 .

[49]  P. Wilson,et al.  Calculated values for low-density lipoprotein cholesterol in the assessment of lipid abnormalities and coronary disease risk. , 1990, Clinical chemistry.

[50]  Donald F. Specht,et al.  A general regression neural network , 1991, IEEE Trans. Neural Networks.

[51]  C. A. Ferguson,et al.  Immunoseparation method for measuring low-density lipoprotein cholesterol directly from serum evaluated. , 1995, Clinical chemistry.

[52]  Albert Bos,et al.  Tutorial review—Data processing by neural networks in quantitative chemical analysis , 1993 .

[53]  C. Björkelund,et al.  Associations of serum lipid concentrations and obesity with mortality in women: 20 year follow up of participants in prospective population study in Gothenburg, Sweden. , 1993, BMJ.

[54]  R. Krauss,et al.  Relationship of intermediate and low-density lipoprotein subspecies to risk of coronary artery disease. , 1987, American heart journal.

[55]  P. Bachorik,et al.  National Cholesterol Education Program recommendations for measurement of low-density lipoprotein cholesterol: executive summary. The National Cholesterol Education Program Working Group on Lipoprotein Measurement. , 1995, Clinical chemistry.

[56]  R. Krauss,et al.  Development of a proton nuclear magnetic resonance spectroscopic method for determining plasma lipoprotein concentrations and subspecies distributions from a single, rapid measurement. , 1992, Clinical chemistry.

[57]  D. Louis Collins,et al.  Accurate, noninvasive diagnosis of human brain tumors by using proton magnetic resonance spectroscopy , 1996, Nature Medicine.

[58]  M Ala-Korpela,et al.  Artificial neural network analysis of 1H nuclear magnetic resonance spectroscopic data from human plasma. , 1996, Anticancer research.

[59]  I Martínez-Pérez,et al.  Genetic programming for classification and feature selection: analysis of 1H nuclear magnetic resonance spectra from human brain tumour biopsies , 1998, NMR in biomedicine.