Systems biotechnology for strain improvement.
暂无分享,去创建一个
Sang Yup Lee | Tae Yong Kim | Dong-Yup Lee | S. Lee | T. Kim | Dong-Yup Lee | Dong‐Yup Lee
[1] A. Burgard,et al. Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions. , 2001, Biotechnology and bioengineering.
[2] S. Junne,et al. Transcriptional analysis of product‐concentration driven changes in cellular programs of recombinant Clostridium acetobutylicumstrains , 2003, Biotechnology and bioengineering.
[3] B. Palsson,et al. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[4] Dong-Eun Lee,et al. Global Analyses of Transcriptomes and Proteomes of a Parent Strain and an l-Threonine-Overproducing Mutant Strain , 2003, Journal of bacteriology.
[5] B. Palsson,et al. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) , 2003, Genome Biology.
[6] Hiroaki Kitano,et al. Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration. , 2003, Omics : a journal of integrative biology.
[7] Karl Sanford,et al. Genomics to fluxomics and physiomics - pathway engineering. , 2002, Current opinion in microbiology.
[8] Manor Askenazi,et al. Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains , 2003, Nature Biotechnology.
[9] Sang Yup Lee,et al. Proteome profiling and its use in metabolic and cellular engineering , 2003, Proteomics.
[10] B. Palsson,et al. Genome-scale models of microbial cells: evaluating the consequences of constraints , 2004, Nature Reviews Microbiology.
[11] Thomas Szyperski,et al. Intracellular Carbon Fluxes in Riboflavin-Producing Bacillussubtilis during Growth on Two-Carbon Substrate Mixtures , 2002, Applied and Environmental Microbiology.
[12] J. Ohnishi,et al. Efficient 40°C fermentation of l-lysine by a new Corynebacterium glutamicum mutant developed by genome breeding , 2003, Applied Microbiology and Biotechnology.
[13] G. Church,et al. Genome-Scale Metabolic Model of Helicobacter pylori 26695 , 2002, Journal of bacteriology.
[14] Sang Yup Lee,et al. Engineering Escherichia coli for Increased Productivity of Serine-Rich Proteins Based on Proteome Profiling , 2003, Applied and Environmental Microbiology.
[15] B. Palsson,et al. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. , 2003, Genome research.
[16] Masaru Tomita,et al. E-CELL: software environment for whole-cell simulation , 1999, Bioinform..
[17] Wolfgang Wiechert,et al. Modeling and simulation: tools for metabolic engineering. , 2002, Journal of biotechnology.
[18] V. Gavrilovic,et al. Genome shuffling of Lactobacillus for improved acid tolerance , 2002, Nature Biotechnology.
[19] Eve Syrkin Wurtele,et al. Functional genomics: high-throughput mRNA, protein, and metabolite analyses. , 2002, Metabolic engineering.
[20] G. Church,et al. Analysis of optimality in natural and perturbed metabolic networks , 2002 .
[21] Sang Yup Lee,et al. MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis , 2003, Bioinform..
[22] Markus J. Herrgård,et al. Integrating high-throughput and computational data elucidates bacterial networks , 2004, Nature.
[23] Kiran Raosaheb Patil,et al. Use of genome-scale microbial models for metabolic engineering. , 2004, Current opinion in biotechnology.
[24] A. Burgard,et al. Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization , 2003, Biotechnology and bioengineering.
[25] S. Lee,et al. Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. , 2003, Biotechnology and bioengineering.
[26] Patrick Lincoln,et al. BioSPICE: access to the most current computational tools for biologists. , 2003, Omics : a journal of integrative biology.
[27] M. Mavrovouniotis,et al. Simplification of Mathematical Models of Chemical Reaction Systems. , 1998, Chemical reviews.
[28] A. Pühler,et al. Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. , 2003, Journal of biotechnology.
[29] Guy Plunkett,et al. Engineering a reduced Escherichia coli genome. , 2002, Genome research.
[30] V. Vinci,et al. Improvement of microbial strains and fermentation processes , 2000, Applied Microbiology and Biotechnology.
[31] Stephen S Fong,et al. Metabolic gene–deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes , 2004, Nature Genetics.
[32] Markus J. Herrgård,et al. Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. , 2004, Genome research.
[33] Igor Goryanin,et al. Mathematical simulation and analysis of cellular metabolism and regulation , 1999, Bioinform..
[34] J. Ohnishi,et al. A novel methodology employing Corynebacterium glutamicum genome information to generate a new L-lysine-producing mutant , 2001, Applied Microbiology and Biotechnology.
[35] Michael Y. Galperin,et al. Genomes back-to-back: when sequencing race is a good thing. , 2004, Environmental microbiology.
[36] J. Stelling. Mathematical models in microbial systems biology. , 2004, Current opinion in microbiology.
[37] Seok Jae Lee,et al. Enhanced Production of Insulin-Like Growth Factor I Fusion Protein in Escherichia coli by Coexpression of the Down-Regulated Genes Identified by Transcriptome Profiling , 2003, Applied and Environmental Microbiology.
[38] J. Ohnishi,et al. Efficient 40 degrees C fermentation of L-lysine by a new Corynebacterium glutamicum mutant developed by genome breeding. , 2003, Applied microbiology and biotechnology.
[39] Mee-Jung Han,et al. Proteome Analysis of Metabolically EngineeredEscherichia coli Producing Poly(3-Hydroxybutyrate) , 2000, Journal of bacteriology.
[40] K. Shimizu,et al. Fermentation characteristics and protein expression patterns in a recombinant Escherichia coli mutant lacking phosphoglucose isomerase for poly(3-hydroxybutyrate) production , 2003, Applied Microbiology and Biotechnology.
[41] C. Wittmann,et al. Modeling and experimental design for metabolic flux analysis of lysine-producing Corynebacteria by mass spectrometry. , 2001, Metabolic engineering.
[42] R. Brent,et al. Modelling cellular behaviour , 2001, Nature.
[43] R. Aebersold,et al. Proteomics: the first decade and beyond , 2003, Nature Genetics.
[44] Thomas Hermann,et al. Using functional genomics to improve productivity in the manufacture of industrial biochemicals. , 2004, Current opinion in biotechnology.
[45] Masaru Tomita,et al. Toward large-scale modeling of the microbial cell for computer simulation. , 2004, Journal of biotechnology.
[46] Stephen G. Oliver,et al. 1 Introduction to Functional Analysis of the Yeast Genome , 1998 .
[47] G. Stephanopoulos,et al. Exploiting biological complexity for strain improvement through systems biology , 2004, Nature Biotechnology.
[48] Pedro Mendes,et al. GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems , 1993, Comput. Appl. Biosci..
[49] J. Nielsen,et al. Impact of 'ome' analyses on inverse metabolic engineering. , 2004, Metabolic engineering.
[50] Sang Yup Lee,et al. The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens , 2004, Nature Biotechnology.
[51] C. Wittmann,et al. In-Depth Profiling of Lysine-Producing Corynebacterium glutamicum by Combined Analysis of the Transcriptome, Metabolome, and Fluxome , 2004, Journal of bacteriology.
[52] George M Church,et al. On the complete determination of biological systems. , 2003, Trends in biotechnology.
[53] Gregory Stephanopoulos,et al. Metabolic engineering by genome shuffling , 2002, Nature Biotechnology.
[54] J. Edwards,et al. Systems Properties of the Haemophilus influenzaeRd Metabolic Genotype* , 1999, The Journal of Biological Chemistry.