Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida

[1]  Tingting Dong,et al.  Genome-wide identification and expression analysis of glycine-rich RNA-binding protein family in sweet potato wild relative Ipomoea trifida. , 2019, Gene.

[2]  Torsten Schwede,et al.  SWISS-MODEL: homology modelling of protein structures and complexes , 2018, Nucleic Acids Res..

[3]  Jing Wu,et al.  Salt and drought stress and ABA responses related to bZIP genes from V. radiata and V. angularis. , 2018, Gene.

[4]  Qin Chen,et al.  Genome-wide analysis of the potato Hsp20 gene family: identification, genomic organization and expression profiles in response to heat stress , 2018, BMC Genomics.

[5]  Kun Lu,et al.  Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus , 2017, Genes.

[6]  Z. Cheng,et al.  Genome-wide analysis and evolution of the bZIP transcription factor gene family in six Fragaria species , 2017, Plant Systematics and Evolution.

[7]  Jukon Kim,et al.  Overexpression of the OsbZIP66 transcription factor enhances drought tolerance of rice plants , 2017, Plant Biotechnology Reports.

[8]  Z. An,et al.  Research advance in self-incompatibility of Ipomoea trifida, an ancestor of sweet potato. , 2017 .

[9]  S. Shigeoka,et al.  Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. , 2016, Plant science : an international journal of experimental plant biology.

[10]  Yan Yan,et al.  Genome-wide analyses of the bZIP family reveal their involvement in the development, ripening and abiotic stress response in banana , 2016, Scientific Reports.

[11]  Xiping Wang,et al.  Evolutionary and Expression Analyses of the Apple Basic Leucine Zipper Transcription Factor Family , 2016, Front. Plant Sci..

[12]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[13]  Yan Yan,et al.  Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava , 2016, Scientific Reports.

[14]  U. Zentgraf,et al.  Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1 , 2015, Plants.

[15]  Yanrong Wang,et al.  Genome-wide identification, expression profiling, and SSR marker development of the bZIP transcription factor family in Medicago truncatula , 2015 .

[16]  C. Mathé,et al.  Explosive Tandem and Segmental Duplications of Multigenic Families in Eucalyptus grandis , 2015, Genome biology and evolution.

[17]  Jukon Kim,et al.  OsbZIP23 and OsbZIP45, members of the rice basic leucine zipper transcription factor family, are involved in drought tolerance , 2015, Plant Biotechnology Reports.

[18]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[19]  S. Song,et al.  Overexpression of the rice basic leucine zipper transcription factor OsbZIP12 confers drought tolerance to rice and makes seedlings hypersensitive to ABA , 2014, Plant Biotechnology Reports.

[20]  M. Baloğlu,et al.  Genome-Wide Analysis of the bZIP Transcription Factors in Cucumber , 2014, PloS one.

[21]  E. Pourabed,et al.  Basic Leucine Zipper Family in Barley: Genome-Wide Characterization of Members and Expression Analysis , 2014, Molecular Biotechnology.

[22]  Mario Pezzotti,et al.  Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera) , 2014, BMC Genomics.

[23]  D. Choi,et al.  Capsicum annuum homeobox 1 (CaHB1) is a nuclear factor that has roles in plant development, salt tolerance, and pathogen defense. , 2013, Biochemical and biophysical research communications.

[24]  Yucheng Wang,et al.  The bZIP protein from Tamarix hispida, ThbZIP1, is ACGT elements binding factor that enhances abiotic stress signaling in transgenic Arabidopsis , 2013, BMC Plant Biology.

[25]  Srilakshmi Makkena,et al.  The bHLH transcription factor SPATULA regulates root growth by controlling the size of the root meristem , 2013, BMC Plant Biology.

[26]  Xiping Wang,et al.  OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice , 2013, Plant Molecular Biology.

[27]  D. Xie,et al.  Genome-Wide Analysis of bZIP-Encoding Genes in Maize , 2012, DNA research : an international journal for rapid publication of reports on genes and genomes.

[28]  Qiuming Yao,et al.  P3DB: An Integrated Database for Plant Protein Phosphorylation , 2012, Front. Plant Sci..

[29]  Hang He,et al.  Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice. , 2012, Plant science : an international journal of experimental plant biology.

[30]  P. McCourt,et al.  HY5 is involved in strigolactone-dependent seed germination in Arabidopsis , 2012, Plant signaling & behavior.

[31]  Jeremy D. DeBarry,et al.  MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity , 2012, Nucleic acids research.

[32]  Xiping Wang,et al.  bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice , 2012, Planta.

[33]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[34]  S. Ramachandran,et al.  Genome-wide expansion and expression divergence of the basic leucine zipper transcription factors in higher plants with an emphasis on sorghum. , 2011, Journal of integrative plant biology.

[35]  Liu Yong-sheng Research on Heat and Drought Tolerance in Rice(Oryza sativa L.) by Overexpressing Transcription Factor OsbZIP60 , 2011 .

[36]  J. Casaretto,et al.  The transcription factor SlAREB1 confers drought, salt stress tolerance and regulates biotic and abiotic stress-related genes in tomato. , 2010, Plant, cell & environment.

[37]  G. An,et al.  The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice. , 2010, Journal of plant physiology.

[38]  Tim Iven,et al.  Homo- and heterodimers of tobacco bZIP proteins counteract as positive or negative regulators of transcription during pollen development. , 2010, The Plant journal : for cell and molecular biology.

[39]  Sanjaya,et al.  A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response , 2010, Planta.

[40]  K. Shinozaki,et al.  AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. , 2010, The Plant journal : for cell and molecular biology.

[41]  Birgit Kersten,et al.  PlnTFDB: updated content and new features of the plant transcription factor database , 2009, Nucleic Acids Res..

[42]  Mark Zander,et al.  Arabidopsis thaliana class-II TGA transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses. , 2009, The Plant journal : for cell and molecular biology.

[43]  E. Grotewold,et al.  MYB transcription factors in Arabidopsis. , 2002, Trends in plant science.

[44]  G. An,et al.  The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice , 2010, Plant Molecular Biology.

[45]  Fan Chen,et al.  Identification and characterization of bZIP-type transcription factors involved in carrot (Daucus carota L.) somatic embryogenesis. , 2009, The Plant journal : for cell and molecular biology.

[46]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[47]  D. Honys,et al.  AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen , 2009, Plant Molecular Biology.

[48]  K. Dietz,et al.  The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networks involved in abiotic stress resistance. , 2009, Gene.

[49]  B. Han,et al.  Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice , 2009, Planta.

[50]  S. Howell,et al.  Stress-induced expression of an activated form of AtbZIP17 provides protection from salt stress in Arabidopsis. , 2008, Plant, cell & environment.

[51]  Lili Huang,et al.  Cloning and characterization of a bZIP transcription factor gene in wheat and its expression in response to stripe rust pathogen infection and abiotic stresses , 2008 .

[52]  C. Benning,et al.  A membrane-tethered transcription factor defines a branch of the heat stress response in Arabidopsis thaliana , 2008, Proceedings of the National Academy of Sciences.

[53]  Ning Tang,et al.  Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice1[W][OA] , 2008, Plant Physiology.

[54]  S. Chen,et al.  Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis , 2008, Planta.

[55]  K. Cao,et al.  AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana. , 2008, BMB reports.

[56]  Fang Zhang,et al.  A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance , 2008, Plant Molecular Biology.

[57]  Mukesh Jain,et al.  Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice1[W][OA] , 2007, Plant Physiology.

[58]  Filip Rolland,et al.  A central integrator of transcription networks in plant stress and energy signalling , 2007, Nature.

[59]  K. Harter,et al.  bZIP10‐LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection , 2006, The EMBO journal.

[60]  Sonja Siljak-Yakovlev,et al.  The origin and evolution of sweet potato (Ipomoea batatas Lam.) and its wild relatives through the cytogenetic approaches. , 2006, Plant science : an international journal of experimental plant biology.

[61]  Klaus Harter,et al.  Combinatorial control of Arabidopsis proline dehydrogenase transcription by specific heterodimerisation of bZIP transcription factors , 2006, The EMBO journal.

[62]  Chang-Jin Park,et al.  In vivo binding of hot pepper bZIP transcription factor CabZIP1 to the G-box region of pathogenesis-related protein 1 promoter. , 2006, Biochemical and biophysical research communications.

[63]  R. Imai,et al.  LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants. , 2005, Plant & cell physiology.

[64]  C. Gatz,et al.  Tobacco bZIP transcription factor TGA2.2 and related factor TGA2.1 have distinct roles in plant defense responses and plant development. , 2005, The Plant journal : for cell and molecular biology.

[65]  K. Goto,et al.  FD, a bZIP Protein Mediating Signals from the Floral Pathway Integrator FT at the Shoot Apex , 2005, Science.

[66]  A. Paterson,et al.  Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[67]  S. Rajapakse,et al.  Phylogenetic relationships of the sweetpotato in Ipomoea series Batatas (Convolvulaceae) based on nuclear beta-amylase gene sequences. , 2004, Molecular phylogenetics and evolution.

[68]  Steven B Cannon,et al.  The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana , 2004, BMC Plant Biology.

[69]  F. Parcy,et al.  bZIP transcription factors in Arabidopsis. , 2002, Trends in plant science.

[70]  J. Riechmann bZIP transcription factors in Arabidopsis , 2002 .

[71]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[72]  E. Holub The arms race is ancient history in Arabidopsis, the wildflower , 2001, Nature Reviews Genetics.

[73]  Y. Kamiya,et al.  REPRESSION OF SHOOT GROWTH, a bZIP Transcriptional Activator, Regulates Cell Elongation by Controlling the Level of Gibberellins , 2000, Plant Cell.

[74]  Mei Sun,et al.  Genetic diversity and relationships of sweetpotato and its wild relatives in Ipomoea series Batatas (Convolvulaceae) as revealed by inter-simple sequence repeat (ISSR) and restriction analysis of chloroplast DNA , 2000, Theoretical and Applied Genetics.

[75]  T. Lynch,et al.  The Arabidopsis Abscisic Acid Response Gene ABI5 Encodes a Basic Leucine Zipper Transcription Factor , 2000, Plant Cell.

[76]  T. Hattori,et al.  A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[77]  F. Locatelli,et al.  The activity of the maize Opaque2 transcriptional activator is regulated diurnally. , 1999, Plant physiology.

[78]  E. Meyerowitz,et al.  The PERIANTHIA gene encodes a bZIP protein involved in the determination of floral organ number in Arabidopsis thaliana. , 1999, Genes & development.

[79]  Kenichi Higo,et al.  PLACE: a database of plant cis-acting regulatory DNA elements , 1998, Nucleic Acids Res..

[80]  C. Lamb,et al.  RF2a, a bZIP transcriptional activator of the phloem‐specific rice tungro bacilliform virus promoter, functions in vascular development , 1997, The EMBO journal.

[81]  M. Ptashne,et al.  Transcriptional activation by recruitment , 1997, Nature.

[82]  H. Hurst Transcription factors 1: bZIP proteins. , 1995, Protein profile.

[83]  R. Foster,et al.  The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. , 1994, The Plant cell.

[84]  D. Llewellyn,et al.  Isolation of a maize bZIP protein subfamily: candidates for the ocs-element transcription factor. , 1993, The Plant journal : for cell and molecular biology.

[85]  B. Müller-Hill,et al.  Identification of three residues in the basic regions of the bZIP proteins GCN4, C/EBP and TAF‐1 that are involved in specific DNA binding. , 1993, The EMBO journal.

[86]  R. Tjian,et al.  Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. , 1989, Science.

[87]  Thomas D. Schmittgen,et al.  Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .