Optimization of industrial microorganisms: recent advances in synthetic dynamic regulators
暂无分享,去创建一个
[1] D. Petranovic,et al. Pharmaceutical protein production by yeast: towards production of human blood proteins by microbial fermentation. , 2012, Current opinion in biotechnology.
[2] Cheryl M. Immethun,et al. Oxygen‐responsive genetic circuits constructed in Synechocystis sp. PCC 6803 , 2016, Biotechnology and bioengineering.
[3] Liming Liu,et al. Engineering redox balance through cofactor systems. , 2014, Trends in biotechnology.
[4] Taizo Hanai,et al. Self-induced metabolic state switching by a tunable cell density sensor for microbial isopropanol production. , 2015, Metabolic engineering.
[5] Haixia Jiang,et al. Quorum sensing systems differentially regulate the production of phenazine-1-carboxylic acid in the rhizobacterium Pseudomonas aeruginosa PA1201 , 2016, Scientific Reports.
[6] James J. Collins,et al. Genetic switchboard for synthetic biology applications , 2012, Proceedings of the National Academy of Sciences.
[7] B. Iglewski,et al. Roles of Pseudomonas aeruginosa las and rhl quorum-sensing systems in control of elastase and rhamnolipid biosynthesis genes , 1997, Journal of bacteriology.
[8] E. Seol,et al. Inducible gene expression system by 3-hydroxypropionic acid , 2015, Biotechnology for Biofuels.
[9] Beatrix Suess,et al. Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators , 2012, FEBS letters.
[10] Claudia E Vickers,et al. Dynamic regulation of gene expression using sucrose responsive promoters and RNA interference in Saccharomyces cerevisiae , 2015, Microbial Cell Factories.
[11] Baojun Wang,et al. Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology , 2011, Nature communications.
[12] Chuan He,et al. A general strategy to convert the MerR family proteins into highly sensitive and selective fluorescent biosensors for metal ions. , 2004, Journal of the American Chemical Society.
[13] Michael Bott,et al. A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level , 2012, Genome Biology.
[14] J. Keasling,et al. Engineering dynamic pathway regulation using stress-response promoters , 2013, Nature Biotechnology.
[15] M. R. O'Brian,et al. Heme is an effector molecule for iron-dependent degradation of the bacterial iron response regulator (Irr) protein. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[16] Peng Xu,et al. Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli. , 2014, ACS chemical biology.
[17] I. Khmel. Quorum-sensing regulation of gene expression: Fundamental and applied aspects and the role in bacterial communication , 2006, Microbiology.
[18] Ana Rute Neves,et al. Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli. , 2014, Metabolic engineering.
[19] J. Liao,et al. Design of artificial cell-cell communication using gene and metabolic networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[20] A. Fleischhacker,et al. Regulation of iron–sulphur cluster homeostasis through transcriptional control of the Isc pathway by [2Fe–2S]–IscR in Escherichia coli , 2013, Molecular microbiology.
[21] Edward J. O'Brien,et al. Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli , 2014, Nature Communications.
[22] G. Jung,et al. Optimum Rebalancing of the 3-Hydroxypropionic Acid Production Pathway from Glycerol in Escherichia coli. , 2016, ACS synthetic biology.
[23] S. K. Desai,et al. Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. , 2004, Journal of the American Chemical Society.
[24] Min-Kyu Oh,et al. A synthetic suicide riboswitch for the high-throughput screening of metabolite production in Saccharomyces cerevisiae. , 2015, Metabolic engineering.
[25] A. Ishihama,et al. Transcriptional Response of Escherichia coli to External Zinc , 2005, Journal of bacteriology.
[26] J. Kornblum,et al. Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule. , 1993, The EMBO journal.
[27] H. Hennecke,et al. Characterization of a fixLJ-regulated Bradyrhizobium japonicum gene sharing similarity with the Escherichia coli fnr and Rhizobium meliloti fixK genes , 1992, Journal of bacteriology.
[28] S. Bartolucci,et al. A novel E. coli biosensor for detecting aromatic aldehydes based on a responsive inducible archaeal promoter fused to the green fluorescent protein , 2009, Applied Microbiology and Biotechnology.
[29] Florian Groher,et al. Synthetic riboswitches - A tool comes of age. , 2014, Biochimica et biophysica acta.
[30] Jared R. Leadbetter,et al. Directed Evolution of Vibrio fischeri LuxR for Improved Response to Butanoyl-Homoserine Lactone , 2007, Applied and Environmental Microbiology.
[31] Johan P.M. Sanders,et al. Bulk chemicals from biomass , 2008 .
[32] Patrick C Cirino,et al. Design and application of a mevalonate-responsive regulatory protein. , 2011, Angewandte Chemie.
[33] Sang Woo Seo,et al. Model-driven rebalancing of the intracellular redox state for optimization of a heterologous n-butanol pathway in Escherichia coli. , 2013, Metabolic engineering.
[34] A. Kortt,et al. Large-scale bacterial fermentation and isolation of scFv multimers using a heat-inducible bacterial expression vector. , 2002, Journal of immunological methods.
[35] J. Collins,et al. Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.
[36] Kresimir Josic,et al. Engineered temperature compensation in a synthetic genetic clock , 2014, Proceedings of the National Academy of Sciences.
[37] F. Vandenesch,et al. The agr P2 operon: an autocatalytic sensory transduction system in Staphylococcus aureus. , 1995, Molecular & general genetics : MGG.
[38] H. Schellhorn,et al. Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria. , 2012, Archives of biochemistry and biophysics.
[39] M. Koffas,et al. Microbial production of value-added nutraceuticals. , 2016, Current opinion in biotechnology.
[40] Christopher A. Voigt,et al. Genetic parts to program bacteria. , 2006, Current opinion in biotechnology.
[41] Julia Frunzke,et al. Transcription factor-based biosensors in biotechnology: current state and future prospects , 2015, Applied Microbiology and Biotechnology.
[42] C. Georgopoulos,et al. Modulation of stability of the Escherichia coli heat shock regulatory factor sigma , 1989, Journal of bacteriology.
[43] S. Norris,et al. Characterization of a manganese-dependent regulatory protein, TroR, from Treponema pallidum. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[44] B. Bassler,et al. Lsr‐mediated transport and processing of AI‐2 in Salmonella typhimurium , 2003, Molecular microbiology.
[45] Chae Hyun Lim,et al. Synthetic RNA devices to expedite the evolution of metabolite-producing microbes , 2013, Nature Communications.
[46] Jay D. Keasling,et al. Engineering Static and Dynamic Control of Synthetic Pathways , 2010, Cell.
[47] Jared R. Leadbetter,et al. Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR , 2006, Nature Biotechnology.
[48] Thomas V. O'Halloran,et al. Identification of a Copper-Responsive Two-Component System on the Chromosome of Escherichia coli K-12 , 2000, Journal of bacteriology.
[49] E. Nudler,et al. The riboswitch control of bacterial metabolism. , 2004, Trends in biochemical sciences.
[50] T. Ideker,et al. A new approach to decoding life: systems biology. , 2001, Annual review of genomics and human genetics.
[51] Huaiwei Liu,et al. Autonomous production of 1,4-butanediol via a de novo biosynthesis pathway in engineered Escherichia coli. , 2015, Metabolic engineering.
[52] R. Novick. Autoinduction and signal transduction in the regulation of staphylococcal virulence , 2003, Molecular microbiology.
[53] Jay D Keasling,et al. Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. , 2012, Metabolic engineering.
[54] G. Stephanopoulos,et al. Selection and optimization of microbial hosts for biofuels production. , 2008, Metabolic engineering.
[55] M. Lagomarsino,et al. Growth-rate-dependent dynamics of a bacterial genetic oscillator. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.
[56] Jay D Keasling,et al. Production of isoprenoid pharmaceuticals by engineered microbes , 2006, Nature chemical biology.
[57] K. Hantke,et al. The ZnuABC high‐affinity zinc uptake system and its regulator Zur in Escherichia coli , 1998, Molecular microbiology.
[58] J. Barredo,et al. Biotechnological lycopene production by mated fermentation of Blakeslea trispora , 2004, Applied Microbiology and Biotechnology.
[59] Ahmad S. Khalil,et al. Synthetic biology: applications come of age , 2010, Nature Reviews Genetics.
[60] Sang Yup Lee,et al. Recent advances in microbial production of fuels and chemicals using tools and strategies of systems metabolic engineering. , 2015, Biotechnology advances.
[61] Sara Hooshangi,et al. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. , 2010, Metabolic engineering.
[62] M. Bennett,et al. A fast, robust, and tunable synthetic gene oscillator , 2008, Nature.
[63] J. Keasling,et al. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids , 2012, Nature Biotechnology.
[64] Joshua K. Michener,et al. High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. , 2012, Metabolic engineering.
[65] M. Otto,et al. Inducible expression and cellular location of AgrB, a protein involved in the maturation of the staphylococcal quorum-sensing pheromone , 2000, Archives of Microbiology.
[66] T. Hanai,et al. Metabolic flux redirection from a central metabolic pathway toward a synthetic pathway using a metabolic toggle switch. , 2014, Metabolic engineering.
[67] V. Zverlov,et al. Biofuels from microbes , 2007, Applied Microbiology and Biotechnology.
[68] C. Gualerzi,et al. Transcriptional and post-transcriptional control of cold-shock genes. , 2003, Journal of molecular biology.
[69] J. Stelling,et al. Robustness of Cellular Functions , 2004, Cell.
[70] Jay D Keasling,et al. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. , 2013, ACS synthetic biology.
[71] S. Lee,et al. Construction of Copper Removing Bacteria Through the Integration of Two-Component System and Cell Surface Display , 2011, Applied biochemistry and biotechnology.
[72] G. Bennett,et al. Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and the glycolysis pathway in Escherichia coli under microaerobic growth conditions. , 2005, Biotechnology and bioengineering.
[73] G. Stephanopoulos,et al. Improving fatty acids production by engineering dynamic pathway regulation and metabolic control , 2014, Proceedings of the National Academy of Sciences.
[74] Mattheos A G Koffas,et al. Metabolic pathway balancing and its role in the production of biofuels and chemicals. , 2015, Current opinion in biotechnology.
[75] L. Nielsen,et al. Quorum-sensing linked RNA interference for dynamic metabolic pathway control in Saccharomyces cerevisiae. , 2015, Metabolic engineering.
[76] Frédéric Leroy,et al. Lactic acid bacteria as functional starter cultures for the food fermentation industry , 2004 .
[77] Shuai Qian,et al. Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter. , 2013, Journal of the American Chemical Society.
[78] Hal Alper,et al. Evolution of an alkane-inducible biosensor for increased responsiveness to short-chain alkanes. , 2012, Journal of biotechnology.
[79] D. Eveleigh,et al. Increasing yields of extracellular enzymes. , 1979, Advances in applied microbiology.
[80] B. Bassler,et al. Regulation of Uptake and Processing of the Quorum-Sensing Autoinducer AI-2 in Escherichia coli , 2005, Journal of bacteriology.
[81] Beatrix Suess,et al. Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast , 2007, Nucleic acids research.
[82] R. Linhardt,et al. Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways. , 2015, Current opinion in biotechnology.
[83] Jason C. Crack,et al. Mechanism of Oxygen Sensing by the Bacterial Transcription Factor Fumarate-Nitrate Reduction (FNR)* , 2004, Journal of Biological Chemistry.
[84] Yinjie J. Tang,et al. Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications. , 2016, Trends in biotechnology.
[85] M. Sauer,et al. Microbial production of organic acids: expanding the markets. , 2008, Trends in biotechnology.
[86] V. H. Liao,et al. Development and testing of a green fluorescent protein‐based bacterial biosensor for measuring bioavailable arsenic in contaminated groundwater samples , 2005, Environmental toxicology and chemistry.
[87] Jeffrey E. Barrick,et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[88] J. Helmann,et al. Bacillus subtilis contains multiple Fur homologues: identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors , 1998, Molecular microbiology.
[89] E. Greenberg,et al. Signalling: Listening in on bacteria: acyl-homoserine lactone signalling , 2002, Nature Reviews Molecular Cell Biology.
[90] H. Salis,et al. Automated physics-based design of synthetic riboswitches from diverse RNA aptamers , 2015, Nucleic acids research.
[91] Irene M. Brockman,et al. Dynamic knockdown of E. coli central metabolism for redirecting fluxes of primary metabolites. , 2014, Metabolic engineering.
[92] Sang Woo Seo,et al. Synthetic biology: tools to design microbes for the production of chemicals and fuels. , 2013, Biotechnology advances.
[93] M. Koffas,et al. Microbial production of natural and non-natural flavonoids: Pathway engineering, directed evolution and systems/synthetic biology. , 2016, Biotechnology advances.
[94] Yit-Heng Chooi,et al. Metabolic engineering for the production of natural products. , 2011, Annual review of chemical and biomolecular engineering.
[95] J. Helmann,et al. Manganese homeostasis in Bacillus subtilis is regulated by MntR, a bifunctional regulator related to the diphtheria toxin repressor family of proteins , 2000, Molecular microbiology.
[96] Chaoying Yu,et al. Metabolic engineering of Escherichia coli for biotechnological production of high-value organic acids and alcohols , 2011, Applied Microbiology and Biotechnology.
[97] R. Gunsalus,et al. The Molybdate-Responsive Escherichia coli ModE Transcriptional Regulator Coordinates Periplasmic Nitrate Reductase (napFDAGHBC) Operon Expression with Nitrate and Molybdate Availability , 2002, Journal of bacteriology.
[98] V. de Lorenzo,et al. Opening the Iron Box: Transcriptional Metalloregulation by the Fur Protein , 1999, Journal of bacteriology.
[99] Gerald Striedner,et al. Tuning the Transcription Rate of Recombinant Protein in Strong Escherichiacoli Expression Systems through Repressor Titration , 2003, Biotechnology progress.
[100] Soon Ho Hong,et al. Construction of a bacterial biosensor for zinc and copper and its application to the development of multifunctional heavy metal adsorption bacteria , 2012 .
[101] George M Church,et al. Regulatory network of acid resistance genes in Escherichia coli , 2003, Molecular microbiology.
[102] Gyoo Yeol Jung,et al. Modular design of metabolic network for robust production of n-butanol from galactose–glucose mixtures , 2015, Biotechnology for Biofuels.
[103] D. Maresch,et al. Development of a fed-batch process for a recombinant Pichia pastoris Δoch1 strain expressing a plant peroxidase , 2015, Microbial Cell Factories.
[104] Q. Qi,et al. Evolution of a chimeric aspartate kinase for L-lysine production using a synthetic RNA device , 2015, Applied Microbiology and Biotechnology.
[105] L. Eberl,et al. LasI/R and RhlI/R Quorum Sensing in a Strain of Pseudomonas aeruginosa Beneficial to Plants , 2009, Applied and Environmental Microbiology.