A realistic agent-based simulation model for COVID-19 based on a traffic simulation and mobile phone data.

Epidemiological simulations as a method are used to better understand and predict the spreading of infectious diseases, for example of COVID-19. This paper presents an approach that combines person-centric data-driven human mobility modelling with a mechanistic infection model and a person-centric disease progression model. The model includes the consequences of disease import, of changed activity participation rates over time (coming from mobility data), of masks, of indoors vs.\ outdoors leisure activities, and of contact tracing. Results show that the model is able to credibly track the infection dynamics in Berlin (Germany). The model can be used to understand the contributions of different activity types to the infection dynamics over time. The model clearly shows the effects of contact reductions, school closures/vacations, or the effect of moving leisure activities from outdoors to indoors in fall. Sensitivity tests show that all ingredients of the model are necessary to track the current infection dynamics. One interesting result from the mobility data is that behavioral changes of the population mostly happened \textit{before} the government-initiated so-called contact ban came into effect. Similarly, people started drifting back to their normal activity patterns \emph{before} the government officially reduced the contact ban. Our work shows that is is possible to build detailed epidemiological simulations from microscopic mobility models relatively quickly. They can be used to investigate mechanical aspects of the dynamics, such as the transmission from political decisions via human behavior to infections, consequences of different lockdown measures, consequences of wearing masks in certain situations, or contact tracing.

[1]  Yiu Chung Lau,et al.  Temporal dynamics in viral shedding and transmissibility of COVID-19 , 2020, Nature Medicine.

[2]  K. Axhausen,et al.  Reconstructing the 2003/2004 H3N2 influenza epidemic in Switzerland with a spatially explicit, individual-based model , 2011, BMC infectious diseases.

[3]  Piet Van Mieghem,et al.  Epidemic processes in complex networks , 2014, ArXiv.

[4]  Matthias an der Heiden,et al.  Schätzung der aktuellen Entwicklung der SARS-CoV-2- Epidemie in Deutschland – Nowcasting , 2020 .

[5]  E. Kostelich,et al.  To mask or not to mask: Modeling the potential for face mask use by the general public to curtail the COVID-19 pandemic , 2020, Infectious Disease Modelling.

[6]  Yan Zhao,et al.  Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus-Infected Pneumonia in Wuhan, China. , 2020, JAMA.

[7]  Dennis L. Chao,et al.  FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model , 2010, PLoS Comput. Biol..

[8]  A. Huppert,et al.  The role of children in the spread of COVID-19: Using household data from Bnei Brak, Israel, to estimate the relative susceptibility and infectivity of children , 2020, medRxiv.

[9]  T. Smieszek A mechanistic model of infection: why duration and intensity of contacts should be included in models of disease spread , 2009, Theoretical Biology and Medical Modelling.

[10]  Aravind Srinivasan,et al.  Modelling disease outbreaks in realistic urban social networks , 2004, Nature.

[11]  Martin A. Nowak,et al.  Evolution and emergence of infectious diseases in theoretical and real-world networks , 2015, Nature Communications.

[12]  Tetsuro Kobayashi,et al.  Closed environments facilitate secondary transmission of coronavirus disease 2019 (COVID-19) , 2020, medRxiv.

[13]  T. Geisel,et al.  Forecast and control of epidemics in a globalized world. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[14]  W. O. Kermack,et al.  A contribution to the mathematical theory of epidemics , 1927 .

[15]  D. Brockmann,et al.  Effective distances for epidemics spreading on complex networks , 2016, Physical review. E.

[16]  Johannes Zierenberg,et al.  Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions , 2020, Science.

[17]  Kay W. Axhausen,et al.  The Multi-Agent Transport Simulation , 2016 .

[18]  MODUS-COVID Bericht vom 02.10.2020 , 2020 .

[19]  HighWire Press Proceedings of the Royal Society of London. Series A, Containing papers of a mathematical and physical character , 1934 .

[20]  Kai Nagel,et al.  Using mobile phone data for epidemiological simulations of lockdowns: government interventions, behavioral changes, and resulting changes of reinfections , 2020, medRxiv.

[21]  T. Geisel,et al.  Natural human mobility patterns and spatial spread of infectious diseases , 2011, 1103.6224.

[22]  C. Whittaker,et al.  Report 9: Impact of non-pharmaceutical interventions (NPIs) to reduce COVID19 mortality and healthcare demand , 2020 .

[23]  K. Nagel,et al.  Mobility traces and spreading of COVID-19 , 2020, medRxiv.

[24]  R. May,et al.  Population biology of infectious diseases: Part II , 1979, Nature.

[25]  Jürgen Hackl,et al.  Epidemic Spreading in Urban Areas Using Agent-Based Transportation Models , 2019, Future Internet.

[26]  Alessandro Vespignani,et al.  Human Mobility Networks, Travel Restrictions, and the Global Spread of 2009 H1N1 Pandemic , 2011, PloS one.

[27]  Kay W. Axhausen,et al.  Eine ereignisorientierte Simulation von Aktivitätenketten zur Parkstandswahl , 1989 .

[28]  Co-Pierre Georg,et al.  SABCoM: A Spatial Agent-Based Covid-19 Model , 2020, medRxiv.

[29]  P. Vollmar,et al.  Virological assessment of hospitalized patients with COVID-2019 , 2020, Nature.

[30]  C. Macken,et al.  Modeling targeted layered containment of an influenza pandemic in the United States , 2008, Proceedings of the National Academy of Sciences.

[31]  Yuan Zhang,et al.  Physical distancing, face masks, and eye protection to prevent person-to-person transmission of SARS-CoV-2 and COVID-19: a systematic review and meta-analysis , 2020, The Lancet.

[32]  M. Nöthen,et al.  Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event , 2020 .

[33]  R. Trimble COVID-19 Dashboard , 2020 .

[34]  Zbigniew Smoreda,et al.  Assessing the use of mobile phone data to describe recurrent mobility patterns in spatial epidemic models , 2017, Royal Society Open Science.

[35]  R. May,et al.  Population biology of infectious diseases: Part I , 1979, Nature.

[36]  M. Dreher,et al.  Charakteristik von 50 hospitalisierten COVID-19-Patienten mit und ohne ARDS , 2020 .

[37]  Timo Smieszek,et al.  Models of epidemics , 2010 .

[38]  R. Melnik,et al.  Modeling latent infection transmissions through biosocial stochastic dynamics , 2020, medRxiv.

[39]  Sebastian Bonhoeffer,et al.  COVID-19 infectivity profile correction. , 2020, Swiss medical weekly.

[40]  Eric H. Y. Lau,et al.  Temporal dynamics in viral shedding and transmissibility of COVID-19 , 2020, Nature Medicine.

[41]  Peter Vortisch,et al.  Modeling Week Activity Schedules for Travel Demand Models , 2017 .

[42]  M. Ben-Akiva,et al.  DEMONSTRATION OF AN ACTIVITY-BASED MODEL FOR PORTLAND , 1999 .