A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis

[1]  J. Damsté,et al.  Singulisphaera acidiphila gen. nov., sp. nov., a non-filamentous, Isosphaera-like planctomycete from acidic northern wetlands. , 2008, International journal of systematic and evolutionary microbiology.

[2]  Mike S. M. Jetten,et al.  Linking Ultrastructure and Function in Four Genera of Anaerobic Ammonium-Oxidizing Bacteria: Cell Plan, Glycogen Storage, and Localization of Cytochrome c Proteins , 2007, Journal of bacteriology.

[3]  J. S. Sinninghe Damsté,et al.  Schlesneria paludicola gen. nov., sp. nov., the first acidophilic member of the order Planctomycetales, from Sphagnum-dominated boreal wetlands. , 2007, International journal of systematic and evolutionary microbiology.

[4]  M. V. van Loosdrecht,et al.  Startup of reactors for anoxic ammonium oxidation: experiences from the first full-scale anammox reactor in Rotterdam. , 2007, Water research.

[5]  M. Graco,et al.  Anaerobic ammonium oxidation in the Peruvian oxygen minimum zone , 2007 .

[6]  D. Tantillo,et al.  They Came from the Deep. Syntheses, Applications, and Biology of Ladderanes , 2007 .

[7]  M. Strous,et al.  Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. , 2007, Systematic and applied microbiology.

[8]  Dustin H. Nouri and Dean J. Tantillo.  They Came From the Deep: Syntheses, Applications, and Biology of Ladderanes , 2006 .

[9]  Stefan Schouten,et al.  Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry. , 2006, Rapid communications in mass spectrometry : RCM.

[10]  M. Strous,et al.  Ladderane phospholipids in anammox bacteria comprise phosphocholine and phosphoethanolamine headgroups. , 2006, FEMS microbiology letters.

[11]  Dmitrij Frishman,et al.  Deciphering the evolution and metabolism of an anammox bacterium from a community genome , 2006, Nature.

[12]  E. Corey,et al.  Enantioselective synthesis of pentacycloanammoxic acid. , 2006, Journal of the American Chemical Society.

[13]  M C M van Loosdrecht,et al.  Global impact and application of the anaerobic ammonium-oxidizing (anammox) bacteria. , 2006, Biochemical Society transactions.

[14]  Marc Strous,et al.  Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox) , 2005, The FEBS journal.

[15]  Jie J. Zheng,et al.  The structural biology of type II fatty acid biosynthesis. , 2005, Annual review of biochemistry.

[16]  R. Amann,et al.  Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[17]  M. Strous,et al.  Stable Carbon Isotopic Fractionations Associated with Inorganic Carbon Fixation by Anaerobic Ammonium-Oxidizing Bacteria , 2004, Applied and Environmental Microbiology.

[18]  Sudhir Kumar,et al.  MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment , 2004, Briefings Bioinform..

[19]  J. Metzger,et al.  Novel halo-oxo-allenic fatty ester derivatives from epoxidized methyl santalbate (methyl trans-11-octadecen-9-ynoate). , 2003, Chemistry and physics of lipids.

[20]  J. G. Kuenen,et al.  Anaerobic ammonium oxidation by anammox bacteria in the Black Sea , 2003, Nature.

[21]  J. Jarrett.  The generation of 5'-deoxyadenosyl radicals by adenosylmethionine-dependent radical enzymes. , 2003, Current opinion in chemical biology.

[22]  Adri C. T. van Duin,et al.  Linearly concatenated cyclobutane lipids form a dense bacterial membrane , 2002, Nature.

[23]  B. Thamdrup,et al.  Factors Controlling Anaerobic Ammonium Oxidation with Nitrite in Marine Sediments , 2002, Applied and Environmental Microbiology.

[24]  J. Olsen,et al.  beta-Ketoacyl-[acyl carrier protein] synthase I of Escherichia coli: aspects of the condensation mechanism revealed by analyses of mutations in the active site pocket. , 2001, Biochemistry.

[25]  J. Browse,et al.  Production of Polyunsaturated Fatty Acids by Polyketide Synthases in Both Prokaryotes and Eukaryotes , 2001, Science.

[26]  G. Gleixner,et al.  Classification of Terpenoids according to the Methylerythritolphosphate or the Mevalonate Pathway with Natural 12 C/13 C Isotope Ratios: Dynamic Allocation of Resources in Induced Plants. , 2001, Angewandte Chemie.

[27]  J. Broderick,et al.  Adenosylmethionine-dependent iron-sulfur enzymes: versatile clusters in a radical new role , 2001, JBIC Journal of Biological Inorganic Chemistry.

[28]  Jorge F. Reyes-Spindola,et al.  Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. , 2001, Nucleic acids research.

[29]  J. Hayes.  Fractionation of Carbon and Hydrogen Isotopes in Biosynthetic Processes , 2001 .

[30]  Fractionation of the Isotopes of Carbon and Hydrogen in Biosynthetic Processes , 2001 .

[31]  S T Cole,et al.  Analysis of the proteome of Mycobacterium tuberculosis in silico. , 1999, Tubercle and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[32]  B. Jørgensen,et al.  Psychrophilic sulfate-reducing bacteria isolated from permanently cold arctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfofaba gelida gen. nov., sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfotalea arctica s , 1999, International journal of systematic bacteriology.

[33]  J. G. Kuenen,et al.  Missing lithotroph identified as new planctomycete , 1999, Nature.

[34]  Marc Strous,et al.  Key Physiology of Anaerobic Ammonium Oxidation , 1999, Applied and Environmental Microbiology.

[35]  T. Koyama,et al.  Molecular Cloning, Expression, and Characterization of the Genes Encoding the Two Essential Protein Components of Micrococcus luteus B-P 26 Hexaprenyl Diphosphate Synthase , 1998, Journal of bacteriology.

[36]  J. G. Kuenen,et al.  Metabolic pathway of anaerobic ammonium oxidation on the basis of 15N studies in a fluidized bed reactor. , 1997, Microbiology.

[37]  K. Vosmann,et al.  A New Allenic Fatty Acid in Phlomis (Lamiaceae) Seed Oil , 1997 .

[38]  R. Heath,et al.  Roles of the FabA and FabZ β-Hydroxyacyl-Acyl Carrier Protein Dehydratases in Escherichia coli Fatty Acid Biosynthesis* , 1996, The Journal of Biological Chemistry.

[39]  R. Heath,et al.  Regulation of Fatty Acid Elongation and Initiation by Acyl-Acyl Carrier Protein in Escherichia coli(*) , 1996, The Journal of Biological Chemistry.

[40]  T. McMeekin,et al.  A new n-C31:9 polyene hydrocarbon from Antarctic bacteria , 1995 .

[41]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[42]  J. Cronan,et al.  Beta-ketoacyl-acyl carrier protein synthase II of Escherichia coli. Evidence for function in the thermal regulation of fatty acid synthesis. , 1980, The Journal of biological chemistry.

[43]  G J Williams,et al.  The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.

[44]  W. Finnerty,et al.  Microbial lipid metabolism. , 1975, CRC critical reviews in microbiology.

[45]  I. Rosenfeld,et al.  Beta-Ketoacyl-acyl carrier protein synthetase. Characterization of the acyl-enzyme intermediate. , 1975, The Journal of biological chemistry.

[46]  M. Bagby,et al.  Laballenic Acid. A New Allenic Acid from Leonotis nepetaefolia Seed Oil1 , 1965 .