Dynamics and structure of an apolar active suspension in an annulus

We study the complex dynamics of a two-dimensional suspension comprising non-motile active particles confined in an annulus. A coarse-grained liquid crystal model is employed to describe the nematic structure evolution, and is hydrodynamically coupled with the Stokes equation to solve for the induced active flows in the annulus. For dilute suspensions, coherent structures are captured by varying the particle activity and gap width, including unidirectional circulations, travelling waves and chaotic flows. For concentrated suspensions, the internal collective dynamics features motile disclination defects and flows at finite gap widths. In particular, we observe an intriguing quasi-steady-state at certain gap widths during which $+1/2$ -order defects oscillate around equilibrium positions accompanying travelling-wave flows that switch circulating directions periodically. We perform linear stability analyses to reveal the underlying physical mechanisms of pattern formation during a concatenation of instabilities.

[1]  I. Aranson,et al.  Concentration dependence of the collective dynamics of swimming bacteria. , 2007, Physical review letters.

[2]  M. Shelley,et al.  Analytical structure, dynamics, and coarse-graining of a kinetic model of an active fluid , 2017, 1703.00969.

[3]  Daniel T. N. Chen,et al.  Tunable dynamics of microtubule-based active isotropic gels , 2014, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[4]  L. G. Leal,et al.  A closure approximation for liquid-crystalline polymer models based on parametric density estimation , 1998 .

[5]  M. Bowick,et al.  Defect annihilation and proliferation in active nematics. , 2013, Physical review letters.

[6]  Wei Wang,et al.  Catalytically driven assembly of trisegmented metallic nanorods and polystyrene tracer particles. , 2016, Soft matter.

[7]  Francis G. Woodhouse,et al.  Spontaneous circulation of confined active suspensions. , 2012, Physical review letters.

[8]  M. Shelley The Dynamics of Microtubule/Motor-Protein Assemblies in Biology and Physics , 2016 .

[9]  Daniel T. N. Chen,et al.  Spontaneous motion in hierarchically assembled active matter , 2012, Nature.

[10]  Tong Gao,et al.  Deformation of elastic particles in viscous shear flow , 2008, J. Comput. Phys..

[11]  M. Shelley,et al.  Multiscale polar theory of microtubule and motor-protein assemblies. , 2014, Physical review letters.

[12]  L. Mahadevan,et al.  Excitable patterns in active nematics. , 2010, Physical review letters.

[13]  R. Golestanian,et al.  Instabilities and topological defects in active nematics , 2013, 1312.4836.

[14]  Howard H. Hu,et al.  Direct numerical simulations of fluid-solid systems using the arbitrary Langrangian-Eulerian technique , 2001 .

[15]  Jörn Dunkel,et al.  Confinement stabilizes a bacterial suspension into a spiral vortex. , 2013, Physical review letters.

[16]  Jean-Baptiste Caussin,et al.  Emergence of macroscopic directed motion in populations of motile colloids , 2013, Nature.

[17]  Christopher Bingham An Antipodally Symmetric Distribution on the Sphere , 1974 .

[18]  Zhaorui Li,et al.  Self-Driven Droplet Powered By Active Nematics. , 2016, Physical review letters.

[19]  S. Ramaswamy,et al.  Hydrodynamics of soft active matter , 2013 .

[20]  Michael Shelley,et al.  Instabilities and nonlinear dynamics of concentrated active suspensions , 2013 .

[21]  L. Mahadevan,et al.  Banding, excitability and chaos in active nematic suspensions , 2011, 1110.4338.

[22]  Jeff Errington,et al.  Bacterial cell division: assembly, maintenance and disassembly of the Z ring , 2009, Nature Reviews Microbiology.

[23]  Sumesh P. Thampi,et al.  Intrinsic free energy in active nematics , 2015, 1510.06929.

[24]  Shi-Yao Zhu,et al.  Field-induced gap, pseudogap and new Van Hove singularity in the triangular lattice , 2005 .

[25]  G. Fredrickson The theory of polymer dynamics , 1996 .

[26]  S. Ramaswamy The Mechanics and Statistics of Active Matter , 2010, 1004.1933.

[27]  Takuji Adachi,et al.  Dynamic self-assembly of microscale rotors and swimmers. , 2015, Soft matter.

[28]  David Saintillan,et al.  Transport of a dilute active suspension in pressure-driven channel flow , 2015, Journal of Fluid Mechanics.

[29]  W. Maier,et al.  Eine einfache molekulare Theorie des nematischen kristallinflüssigen Zustandes , 1958 .

[30]  Michael J Shelley,et al.  Multiscale modeling and simulation of microtubule-motor-protein assemblies. , 2015, Physical review. E, Statistical, nonlinear, and soft matter physics.

[31]  F. Sagués,et al.  Control of active liquid crystals with a magnetic field , 2016, Proceedings of the National Academy of Sciences.

[32]  Enkeleida Lushi,et al.  Fluid flows created by swimming bacteria drive self-organization in confined suspensions , 2014, Proceedings of the National Academy of Sciences.

[33]  Michael Shelley,et al.  Active suspensions and their nonlinear models , 2013 .

[34]  M. Shelley,et al.  Instabilities, pattern formation and mixing in active suspensions , 2008 .

[35]  Miha Ravnik,et al.  Confined active nematic flow in cylindrical capillaries. , 2012, Physical review letters.

[36]  M. Marchetti,et al.  Probing the shear viscosity of an active nematic film. , 2016, Physical review. E.

[37]  E. Kanso,et al.  Density Shock Waves in Confined Microswimmers. , 2015, Physical review letters.

[38]  J. Joanny,et al.  Spontaneous flow transition in active polar gels , 2005, q-bio/0503022.

[39]  Maxime Theillard,et al.  Geometric control of active collective motion. , 2016, Soft matter.

[40]  Seth Fraden,et al.  Transition from turbulent to coherent flows in confined three-dimensional active fluids , 2017, Science.

[41]  P. Gennes,et al.  The physics of liquid crystals , 1974 .

[42]  Raymond E. Goldstein,et al.  Directed collective motion of bacteria under channel confinement , 2016, 1603.01143.