UniPROBE: an online database of protein binding microarray data on protein–DNA interactions
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[1] William Stafford Noble,et al. Quantifying similarity between motifs , 2007, Genome Biology.
[2] K. Struhl,et al. Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein , 1989, Molecular and cellular biology.
[3] David Botstein,et al. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein–DNA association , 2001, Nature Genetics.
[4] Kimberly Van Auken,et al. WormBase 2007 , 2007, Nucleic Acids Res..
[5] W. Raub. From the National Institutes of Health. , 1990, JAMA.
[6] A. Valencia,et al. A gene network for navigating the literature , 2004, Nature Genetics.
[7] Martha L. Bulyk,et al. Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data , 2006, BMC Bioinformatics.
[8] Alexander E. Kel,et al. TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..
[9] Gary D. Stormo,et al. enoLOGOS: a versatile web tool for energy normalized sequence logos , 2005, Nucleic Acids Res..
[10] Andrew R. Gehrke,et al. Specific DNA-binding by Apicomplexan AP2 transcription factors , 2008, Proceedings of the National Academy of Sciences.
[11] M. Berger,et al. The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters , 2008, Molecular microbiology.
[12] P. Brown,et al. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase. , 2000, Molecular cell.
[13] A. Philippakis,et al. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities , 2006, Nature Biotechnology.
[14] Kara Dolinski,et al. Gene Ontology annotations at SGD: new data sources and annotation methods , 2007, Nucleic Acids Res..
[15] Z. Weng,et al. A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome , 2006, Cell.
[16] G. Stormo,et al. Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay. , 2001, Nucleic acids research.
[17] John J. Wyrick,et al. Genome-wide location and function of DNA binding proteins. , 2000, Science.
[18] R. Young,et al. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays , 2004, Nature Genetics.
[19] Martha L Bulyk,et al. DNA microarray technologies for measuring protein-DNA interactions. , 2006, Current opinion in biotechnology.
[20] G. Church,et al. Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors. , 2002, Nucleic acids research.
[21] Allen D. Delaney,et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing , 2007, Nature Methods.
[22] Daniel E. Newburger,et al. Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences , 2008, Cell.
[23] Martha L Bulyk,et al. Microarray Analyses of Newborn Mouse Ovaries Lacking Nobox1 , 2007, Biology of reproduction.
[24] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[25] Ole Winther,et al. JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update , 2007, Nucleic Acids Res..
[26] William Noble Grundy,et al. Meta-MEME: motif-based hidden Markov models of protein families , 1997, Comput. Appl. Biosci..
[27] Fangxue Sherry He,et al. Systematic identification of mammalian regulatory motifs' target genes and functions , 2008, Nature Methods.
[28] M. Berger,et al. Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors , 2009, Nature Protocols.
[29] Magdalena I. Swanson,et al. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation , 2007, Genome Biology.
[30] P. Bucher,et al. High-throughput SELEX–SAGE method for quantitative modeling of transcription-factor binding sites , 2002, Nature Biotechnology.
[31] D. Botstein,et al. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF , 2001, Nature.
[32] A. Mortazavi,et al. Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.
[33] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[34] Anthony A. Philippakis,et al. Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments , 2007, RECOMB.
[35] M. Kimmel,et al. Conflict of interest statement. None declared. , 2010 .