Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space
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Elon Portugaly | Michal Linial | Menachem Fromer | Yaniv Loewenstein | M. Linial | Elon Portugaly | M. Fromer | Yaniv Loewenstein | E. Portugaly
[1] Robert D. Finn,et al. New developments in the InterPro database , 2007, Nucleic Acids Res..
[2] Roded Sharan,et al. Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis , 2000, ISMB.
[3] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[4] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[5] Ori Sasson,et al. ProtoNet 4.0: A hierarchical classification of one million protein sequences , 2004, Nucleic Acids Res..
[6] W. Fitch,et al. Construction of phylogenetic trees. , 1967, Science.
[7] Burkhard Rost,et al. Domains, motifs and clusters in the protein universe. , 2003, Current opinion in chemical biology.
[8] Ori Sasson,et al. Predicting fold novelty based on ProtoNet hierarchical classification , 2005, Bioinform..
[9] Patrik D'haeseleer,et al. How does gene expression clustering work? , 2005, Nature Biotechnology.
[10] Delbert Dueck,et al. Clustering by Passing Messages Between Data Points , 2007, Science.
[11] Ori Sasson,et al. Functional annotation prediction: All for one and one for all , 2006, Protein science : a publication of the Protein Society.
[12] E. Webb. Enzyme nomenclature 1992. Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes. , 1992 .
[13] Paul D. Thomas,et al. On the quality of tree-based protein classification , 2005, Bioinform..
[14] Peter B. McGarvey,et al. UniRef: comprehensive and non-redundant UniProt reference clusters , 2007, Bioinform..
[15] Michal Linial,et al. A functional hierarchical organization of the protein sequence space , 2004, BMC Bioinformatics.
[16] Michal Linial,et al. ProtoBee: hierarchical classification and annotation of the honey bee proteome. , 2006, Genome research.
[17] Robert Petryszak,et al. The predictive power of the CluSTr database , 2005, Bioinform..
[18] Bernard De Baets,et al. UPGMA clustering revisited: A weight-driven approach to transitive approximation , 2006, Int. J. Approx. Reason..
[19] Dave Bridges,et al. Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes , 2005, BMC Bioinformatics.
[20] P. Sneath. The application of computers to taxonomy. , 1957, Journal of general microbiology.
[21] Martin Vingron,et al. Large scale hierarchical clustering of protein sequences , 2005, BMC Bioinformatics.
[22] Sean R. Eddy,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[23] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[24] F. Delsuc,et al. Phylogenomics and the reconstruction of the tree of life , 2005, Nature Reviews Genetics.
[25] Michal Linial,et al. A robust method to detect structural and functional remote homologues , 2004, Proteins.
[26] Robert R. Sokal,et al. A statistical method for evaluating systematic relationships , 1958 .
[27] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.