A metagenomics approach to characterize the footrot microbiome in Merino sheep.

[1]  Sandra Cavaco,et al.  Ovine footrot in Southern Portugal: Detection of Dichelobacter nodosus and Fusobacterium necrophorum in sheep with different lesion scores. , 2022, Veterinary microbiology.

[2]  Martin J. Green,et al.  Differences in composition of interdigital skin microbiota predict sheep and feet that develop footrot , 2021, Scientific Reports.

[3]  Catrin Rutland,et al.  A Trifecta of New Insights into Ovine Footrot for Infection Drivers, Immune Response, and Host-Pathogen Interactions , 2021, Infection and immunity.

[4]  A. Steiner,et al.  Ovine footrot: A review of current knowledge. , 2021, Veterinary journal.

[5]  Ben Caddey.  Characterizing the microbiota of bovine digital dermatitis , 2021 .

[6]  P. Richards,et al.  The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis , 2021, Animal Microbiome.

[7]  G. Castellani,et al.  Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota , 2021, Scientific Reports.

[8]  Sang-Suk Lee,et al.  Treponema spp., the dominant pathogen in the lesion of bovine digital dermatitis and its characterization in dairy cattle. , 2020, Veterinary microbiology.

[9]  Jan P. Meier-Kolthoff,et al.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes , 2019, Front. Microbiol..

[10]  Jennifer Lu,et al.  Improved metagenomic analysis with Kraken 2 , 2019, Genome Biology.

[11]  R. Whittington,et al.  The microbiome of the footrot lesion in Merino sheep is characterized by a persistent bacterial dysbiosis. , 2019, Veterinary microbiology.

[12]  I. Bossis,et al.  Aetiology, Risk Factors, Diagnosis and Control of Foot-Related Lameness in Dairy Sheep , 2019, Animals : an open access journal from MDPI.

[13]  M. Riggio,et al.  Black-pigmented anaerobic bacteria associated with ovine periodontitis. , 2017, Veterinary microbiology.

[14]  Richard D Emes,et al.  A distinct bacterial dysbiosis associated skin inflammation in ovine footrot , 2017, Scientific Reports.

[15]  O. Sahin,et al.  Campylobacter-Associated Diseases in Animals. , 2017, Annual review of animal biosciences.

[16]  D. Raoult,et al.  “Ezakiella massiliensis” sp. nov., a new bacterial species isolated from human female genital tract , 2016, New microbes and new infections.

[17]  Steven Salzberg,et al.  Bracken: Estimating species abundance in metagenomics data , 2016, bioRxiv.

[18]  S. Verma,et al.  Infectious lameness among migratory sheep and goats in north-west India, with particular focus on anaerobes. , 2015, Revue scientifique et technique.

[19]  Cecil M. Lewis,et al.  Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru. , 2015, Anaerobe.

[20]  L. E. Sullivan,et al.  Contagious ovine digital dermatitis: an emerging disease. , 2014, Veterinary journal.

[21]  John D Lambris,et al.  Porphyromonas gingivalis manipulates complement and TLR signaling to uncouple bacterial clearance from inflammation and promote dysbiosis. , 2014, Cell host & microbe.

[22]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[23]  M. Mini,et al.  Identification of anaerobic and concomitant aerobic bacterial etiologies in caprine footrot , 2014 .

[24]  A. el-aal,et al.  Infectious diseases causing lameness in cattle with a main emphasis on digital dermatitis (Mortellaro disease) , 2013 .

[25]  G. Medley,et al.  Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome , 2011, The ISME Journal.

[26]  Adeline R. Whitney,et al.  Staphylococcus epidermidis Strategies to Avoid Killing by Human Neutrophils , 2010, PLoS pathogens.

[27]  J. Kaler,et al.  Randomized clinical trial of long-acting oxytetracycline, foot trimming, and flunixine meglumine on time to recovery in sheep with footrot. , 2010, Journal of veterinary internal medicine.

[28]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[29]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[30]  J. Nally,et al.  Identification of Spirochetes Associated with Contagious Ovine Digital Dermatitis , 2009, Journal of Clinical Microbiology.

[31]  D. Morck,et al.  Identification of Porphyromonas levii isolated from clinical cases of bovine interdigital necrobacillosis by 16S rRNA sequencing. , 2009, Veterinary therapeutics : research in applied veterinary medicine.

[32]  Mario Recker,et al.  Opinion: The evolution and maintenance of virulence in Staphylococcus aureus: a role for host-to-host transmission? , 2006, Nature Reviews Microbiology.

[33]  J. Watts.  Etiological agents of bovine mastitis. , 1988, Veterinary microbiology.

[34]  D. S. Roberts,et al.  The aetiology and pathogenesis of ovine foot-rot. I. A histological study of the bacterial invasion. , 1969, Journal of comparative pathology.