Effectively predicting protein functions by collective classification — An extended abstract
暂无分享,去创建一个
Wei Xiong | Hui Liu | Shuigeng Zhou | Jihong Guan | J. Guan | Shuigeng Zhou | Hui Liu | Wei Xiong
[1] Christian J. A. Sigrist,et al. Nucleic Acids Research Advance Access published November 14, 2007 The 20 years of PROSITE , 2007 .
[2] R. Sharan,et al. Network-based prediction of protein function , 2007, Molecular systems biology.
[3] Shoshana J. Wodak,et al. CYGD: the Comprehensive Yeast Genome Database , 2004, Nucleic Acids Res..
[4] Damian Szklarczyk,et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored , 2010, Nucleic Acids Res..
[5] Ignacio Marín,et al. Iterative Cluster Analysis of Protein Interaction Data , 2005, Bioinform..
[6] Mona Singh,et al. Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps , 2005, ISMB.
[7] Limsoon Wong,et al. Exploiting indirect neighbours and topological weight to predict protein function from protein--protein interactions , 2006 .
[8] Limsoon Wong,et al. Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions , 2006, BioDM.
[9] H. Mewes,et al. The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. , 2004, Nucleic acids research.
[10] J M Thornton,et al. Derivation of 3D coordinate templates for searching structural databases: Application to ser‐His‐Asp catalytic triads in the serine proteinases and lipases , 1996, Protein science : a publication of the Protein Society.
[11] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[12] Rachael P. Huntley,et al. The GOA database in 2009—an integrated Gene Ontology Annotation resource , 2008, Nucleic Acids Res..
[13] Igor V. Tetko,et al. The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context , 2005, Nucleic Acids Res..
[14] Jan Griebsch,et al. PAST: fast structure-based searching in the PDB , 2006, Nucleic Acids Res..
[15] Illés J. Farkas,et al. CFinder: locating cliques and overlapping modules in biological networks , 2006, Bioinform..
[16] Lise Getoor,et al. Collective Classification in Network Data , 2008, AI Mag..
[17] Adam Godzik,et al. FATCAT: a web server for flexible structure comparison and structure similarity searching , 2004, Nucleic Acids Res..
[18] B. Schwikowski,et al. A network of protein–protein interactions in yeast , 2000, Nature Biotechnology.
[19] Marco Punta,et al. Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery. , 2005, Drug discovery today.