High-resolution analysis of the human T-cell receptor repertoire
暂无分享,去创建一个
Christof von Kalle | Raffaele Fronza | Hanno Glimm | Manfred Schmidt | Anne Arens | C. von Kalle | S. Goerdt | H. Glimm | P. Krammer | R. Fronza | Manfred Schmidt | Anna Paruzynski | A. Arens | A. Nowrouzi | Peter H. Krammer | E. Ruggiero | J. Nicolay | Anna Paruzynski | Sergij Goerdt | Ali Nowrouzi | Eliana Ruggiero | Jan P. Nicolay | Gökçe Ürenden | Christina Lulay | Sven Schneider | S. Schneider | Christina Lulay | Gökçe Ürenden | A. Paruzynski | M. Schmidt
[1] S. Balk,et al. Analysis of T cell antigen receptor (TCR) expression by human peripheral blood CD4-8- alpha/beta T cells demonstrates preferential use of several V beta genes and an invariant TCR alpha chain , 1993, The Journal of experimental medicine.
[2] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[3] Andrew K. Sewell,et al. Genetic and Structural Basis for Selection of a Ubiquitous T Cell Receptor Deployed in Epstein-Barr Virus Infection , 2010, PLoS pathogens.
[4] B. Pulendran,et al. Ligation-anchored PCR: a simple amplification technique with single-sided specificity. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[5] R. Küppers,et al. Analysis of T-cell subpopulations in T-cell non-Hodgkin's lymphoma of angioimmunoblastic lymphadenopathy with dysproteinemia type by single target gene amplification of T cell receptor- beta gene rearrangements. , 2001, The American journal of pathology.
[6] S. Migueles,et al. Avidity for antigen shapes clonal dominance in CD8+ T cell populations specific for persistent DNA viruses , 2005, The Journal of experimental medicine.
[7] J. Bell,et al. Human HLA-A0201-restricted cytotoxic T lymphocyte recognition of influenza A is dominated by T cells bearing the V beta 17 gene segment , 1995, The Journal of experimental medicine.
[8] M. Lieber,et al. Mechanistic constraints on diversity in human V(D)J recombination , 1996, Molecular and cellular biology.
[9] D. Douek,et al. Unbiased Molecular Analysis of T Cell Receptor Expression Using Template‐Switch Anchored RT‐PCR , 2011, Current protocols in immunology.
[10] Luca Biasco,et al. Comprehensive genomic access to vector integration in clinical gene therapy , 2009, Nature Medicine.
[11] Marie-Paule Lefranc,et al. IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONs , 2004, ISMB/ECCB.
[12] Sang Joon Kim,et al. A Mathematical Theory of Communication , 2006 .
[13] W. Bossert,et al. The Measurement of Diversity , 2001 .
[14] Stephan Wolf,et al. Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing , 2010, Nature Protocols.
[15] J. Bell,et al. Variation in human T cell receptor V beta and J beta repertoire: analysis using anchor polymerase chain reaction. , 1992, European journal of immunology.
[16] S. Josefowicz,et al. CMV antigen-specific CD4+ and CD8+ T cell IFNgamma expression and proliferation responses in healthy CMV-seropositive individuals. , 2004, Viral immunology.
[17] Daniel C. Douek,et al. Convergent recombination shapes the clonotypic landscape of the naïve T-cell repertoire , 2010, Proceedings of the National Academy of Sciences.
[18] J. Bell,et al. Extensive conservation of alpha and beta chains of the human T-cell antigen receptor recognizing HLA-A2 and influenza A matrix peptide. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[19] D J Moss,et al. Dominant selection of an invariant T cell antigen receptor in response to persistent infection by Epstein-Barr virus , 1994, The Journal of experimental medicine.
[20] F. Marincola,et al. CMV pp65 and IE-1 T cell epitopes recognized by healthy subjects , 2007, Journal of Translational Medicine.
[21] David A Jones,et al. Profound loss of T-cell receptor repertoire complexity in cutaneous T-cell lymphoma. , 2003, Blood.
[22] R. Holt,et al. Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. , 2009, Genome research.
[23] Benedict Ng,et al. NKT and MAIT invariant TCRα sequences can be produced efficiently by VJ gene recombination. , 2013, Immunobiology.
[24] Mikhail Shugay,et al. MiTCR: software for T-cell receptor sequencing data analysis , 2013, Nature Methods.
[25] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[26] Nicola Pimpinelli,et al. Revisions to the staging and classification of mycosis fungoides and Sezary syndrome: a proposal of the International Society for Cutaneous Lymphomas (ISCL) and the cutaneous lymphoma task force of the European Organization of Research and Treatment of Cancer (EORTC). , 2007, Blood.
[27] Jérôme Lane,et al. IMGT®, the international ImMunoGeneTics information system® , 2004, Nucleic Acids Res..
[28] Sergey Lukyanov,et al. Next generation sequencing for TCR repertoire profiling: Platform‐specific features and correction algorithms , 2012, European journal of immunology.
[29] C. Carlson,et al. Overlap and Effective Size of the Human CD8+ T Cell Receptor Repertoire , 2010, Science Translational Medicine.
[30] R. Küppers,et al. Analysis of T-cell subpopulations in T-cell non-Hodgkin's lymphoma of angioimmunoblastic lymphadenopathy with dysproteinemia type by single target gene amplification of T cell receptor- beta gene rearrangements. , 2001, The American journal of pathology.
[31] C E Shannon,et al. The mathematical theory of communication. 1963. , 1997, M.D. computing : computers in medical practice.
[32] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[33] Daniel C. Douek,et al. A Novel Approach to the Analysis of Specificity, Clonality, and Frequency of HIV-Specific T Cell Responses Reveals a Potential Mechanism for Control of Viral Escape1 , 2002, The Journal of Immunology.
[34] L. Picker,et al. Cytomegalovirus (CMV) phosphoprotein 65 makes a large contribution to shaping the T cell repertoire in CMV-exposed individuals. , 2002, The Journal of infectious diseases.
[35] Hanno Glimm,et al. High-resolution insertion-site analysis by linear amplification–mediated PCR (LAM-PCR) , 2007, Nature Methods.
[36] D. Price,et al. The molecular basis for public T-cell responses? , 2008, Nature Reviews Immunology.
[37] Abigail Wacher,et al. Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. , 2009, Blood.
[38] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[39] Richard A. Moore,et al. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. , 2011, Genome research.
[40] Daniel C. Douek,et al. Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination , 2006, Proceedings of the National Academy of Sciences.
[41] Jiahuai Han,et al. Determinants of public T cell responses , 2012, Cell Research.
[42] Frank Baas,et al. Human T-cell memory consists mainly of unexpanded clones. , 2010, Immunology letters.
[43] Baback Gharizadeh,et al. High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets , 2010, Proceedings of the National Academy of Sciences.
[44] O. Gotoh. An improved algorithm for matching biological sequences. , 1982, Journal of molecular biology.
[45] Susan M. Schlenner,et al. Thymus-autonomous T cell development in the absence of progenitor import , 2012, The Journal of experimental medicine.
[46] X. Jin,et al. The human cytotoxic T-lymphocyte (CTL) response to cytomegalovirus is dominated by structural protein pp65: frequency, specificity, and T-cell receptor usage of pp65-specific CTL , 1996, Journal of virology.
[47] M. Bonneville,et al. Selection of T Cell Clones Expressing High-Affinity Public TCRs within Human Cytomegalovirus-Specific CD8 T Cell Responses1 , 2005, The Journal of Immunology.