Characterization of Fluorescent Proteins with Intramolecular Photostabilization

Genetically encodable fluorescent proteins have revolutionized biological imaging in vivo and in vitro. Since there are no other natural fluorescent tags with comparable features, the impact of fluorescent proteins for biological research cannot be overemphasized. Despite their importance, their photophysical properties, i.e., brightness, count-rate and photostability, are relatively poor compared to synthetic organic fluorophores or quantum dots. Intramolecular photostabilizers were recently rediscovered as an effective approach to improve photophysical properties. The approach uses direct conjugation of photostablizing compounds such as triplet-state quenchers or redox-active substances to an organic fluorophore, thereby creating high local concentrations of photostabilizer. Here, we introduce an experimental strategy to screen for the effects of covalently-linked photostabilizers on fluorescent proteins. We recombinantly produced a double cysteine mutant (A206C/L221C) of α-GFP for attachment of photostabilizer-maleimides on the ß-barrel in close proximity to the chromophore. Whereas labelling with photostabilizers such as Trolox, Nitrophenyl, and Cyclooctatetraene, which are often used for organic fluorophores, had no effect on α-GFP-photostability, a substantial increase of photostability was found upon conjugation of α-GFP to an azobenzene derivative. Although the mechanism of the photostabilizing effects remains to be elucidated, we speculate that the higher triplet-energy of azobenzene might be crucial for triplet-quenching of fluorophores in the near-UV and blue spectral range. Our study paves the way towards the development and design of a second generation of fluorescent proteins with photostabilizers placed directly in the protein barrel by methods such as unnatural amino acid incorporation.

[1]  Lei Zhang,et al.  Self-Healing Dyes - Keeping The Promise? , 2020, The journal of physical chemistry letters.

[2]  D. Balding,et al.  HLA Sequence Polymorphism and the Origin of Humans , 2006 .

[3]  T. Cordes,et al.  Self-healing dyes for super-resolution fluorescence microscopy , 2018, Journal of Physics D: Applied Physics.

[4]  Eliza M. Warszawik,et al.  On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores , 2018, bioRxiv.

[5]  A. Harriman,et al.  Photocatalysis and self-catalyzed photobleaching with covalently-linked chromophore-quencher conjugates built around BOPHY , 2018, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[6]  D. Bourgeois,et al.  A Long-Lived Triplet State Is the Entrance Gateway to Oxidative Photochemistry in Green Fluorescent Proteins. , 2018, Journal of the American Chemical Society.

[7]  A. P. Grigoryev,et al.  Struggle for photostability: Bleaching mechanisms of fluorescent proteins , 2017, Russian Journal of Bioorganic Chemistry.

[8]  G. Cosa,et al.  Redox-Based Photostabilizing Agents in Fluorescence Imaging: The Hidden Role of Intersystem Crossing in Geminate Radical Ion Pairs. , 2017, Journal of the American Chemical Society.

[9]  Zeno Lavagnino,et al.  Quantitative Assessment of Fluorescent Proteins , 2016, Nature Methods.

[10]  H. Abruña,et al.  Intra-molecular triplet energy transfer is a general approach to improve organic fluorophore photostability , 2016, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[11]  Christian Eggeling,et al.  A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization , 2016, Nature Communications.

[12]  Philip Tinnefeld,et al.  Super-Resolution Imaging Conditions for enhanced Yellow Fluorescent Protein (eYFP) Demonstrated on DNA Origami Nanorulers , 2015, Scientific Reports.

[13]  B. Poolman,et al.  Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ , 2014, Nature Structural &Molecular Biology.

[14]  Jens Oelerich,et al.  The Power of Two: Covalent Coupling of Photostabilizers for Fluorescence Applications. , 2014, The journal of physical chemistry letters.

[15]  S. Jockusch,et al.  Ultra-stable organic fluorophores for single-molecule research. , 2014, Chemical Society reviews.

[16]  Gerard Roelfes,et al.  Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores. , 2013, Chemphyschem : a European journal of chemical physics and physical chemistry.

[17]  Joselito M. Razal,et al.  Wet-spinning of PEDOT:PSS/Functionalized-SWNTs Composite: a Facile Route Toward Production of Strong and Highly Conducting Multifunctional Fibers , 2013, Scientific Reports.

[18]  Christopher P. Toseland,et al.  Fluorescent labeling and modification of proteins , 2013, Journal of chemical biology.

[19]  S. Mayor,et al.  Light driven ultrafast electron transfer in oxidative redding of Green Fluorescent Proteins , 2013, Scientific Reports.

[20]  Michael W. Davidson,et al.  A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum , 2013, Nature Methods.

[21]  P. Dedecker,et al.  Fluorescent proteins: shine on, you crazy diamond. , 2013, Journal of the American Chemical Society.

[22]  K. Lukyanov,et al.  Anti-Fading Media for Live Cell GFP Imaging , 2012, PloS one.

[23]  Steffen Jockusch,et al.  On the Mechanisms of Cyanine Fluorophore Photostabilization. , 2012, The journal of physical chemistry letters.

[24]  P. Tinnefeld,et al.  'Self-healing' dyes: intramolecular stabilization of organic fluorophores , 2012, Nature Methods.

[25]  Daniel S. Terry,et al.  Enhanced photostability of cyanine fluorophores across the visible spectrum , 2012, Nature Methods.

[26]  W. Thiel,et al.  Intramolecular hydrogen bonding plays a crucial role in the photophysics and photochemistry of the GFP chromophore. , 2012, Journal of the American Chemical Society.

[27]  Christian Eggeling,et al.  A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching , 2011, Nature Biotechnology.

[28]  David W Piston,et al.  Fluorescent proteins at a glance , 2011, Journal of Cell Science.

[29]  W. Webb,et al.  Mechanisms of quenching of Alexa fluorophores by natural amino acids. , 2010, Journal of the American Chemical Society.

[30]  Timothy D. Craggs Green fluorescent protein: structure, folding and chromophore maturation. , 2009, Chemical Society reviews.

[31]  Alexander S. Mishin,et al.  Green fluorescent proteins are light-induced electron donors , 2009, Nature chemical biology.

[32]  James B. Munro,et al.  Mitigating unwanted photophysical processes for improved single-molecule fluorescence imaging. , 2009, Biophysical journal.

[33]  Mike Heilemann,et al.  A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes. , 2008, Angewandte Chemie.

[34]  G. Jung,et al.  Photostability of green and yellow fluorescent proteins with fluorinated chromophores, investigated by fluorescence correlation spectroscopy. , 2008, Biophysical chemistry.

[35]  Colin Echeverría Aitken,et al.  An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. , 2008, Biophysical journal.

[36]  G. Waldo,et al.  The rough energy landscape of superfolder GFP is linked to the chromophore. , 2007, Journal of molecular biology.

[37]  P. Tavan,et al.  Light-triggered β-hairpin folding and unfolding , 2007, Proceedings of the National Academy of Sciences.

[38]  W. Webb,et al.  Dynamics of equilibrium structural fluctuations of apomyoglobin measured by fluorescence correlation spectroscopy , 2007, Proceedings of the National Academy of Sciences.

[39]  S. Remington Fluorescent proteins: maturation, photochemistry and photophysics. , 2006, Current opinion in structural biology.

[40]  W. Zinth,et al.  Hemithioindigo-based photoswitches as ultrafast light trigger in chromopeptides , 2006 .

[41]  G. Jung,et al.  Improving autofluorescent proteins: Comparative studies of the effective brightness of Green Fluorescent Protein (GFP) mutants , 2006, Microscopy research and technique.

[42]  P. Papazafiri,et al.  Synthesis of chroman analogues of lipoic acid and evaluation of their activity against reperfusion arrhythmias. , 2004, Bioorganic & medicinal chemistry.

[43]  Jeremy C. Smith,et al.  Fluorescence quenching of dyes by tryptophan: interactions at atomic detail from combination of experiment and computer simulation. , 2003, Journal of the American Chemical Society.

[44]  Robert Huber,et al.  Expansion of the genetic code enables design of a novel "gold" class of green fluorescent proteins. , 2003, Journal of molecular biology.

[45]  Douglas Magde,et al.  Fluorescence Quantum Yields and Their Relation to Lifetimes of Rhodamine 6G and Fluorescein in Nine Solvents: Improved Absolute Standards for Quantum Yields¶ , 2002, Photochemistry and photobiology.

[46]  M. Zimmer,et al.  Green fluorescent protein (GFP): applications, structure, and related photophysical behavior. , 2002, Chemical reviews.

[47]  G. A. Blab,et al.  Autofluorescent proteins in single-molecule research: applications to live cell imaging microscopy. , 2001, Biophysical journal.

[48]  A S Verkman,et al.  Green fluorescent protein as a noninvasive intracellular pH indicator. , 1998, Biophysical journal.

[49]  G. Patterson,et al.  Use of the green fluorescent protein and its mutants in quantitative fluorescence microscopy. , 1997, Biophysical journal.

[50]  M. Lipoldová,et al.  Resistance to Leishmania major in Mice , 1996, Science.

[51]  G. Phillips,et al.  The molecular structure of green fluorescent protein , 1996, Nature Biotechnology.

[52]  Roger Y. Tsien,et al.  Crystal Structure of the Aequorea victoria Green Fluorescent Protein , 1996, Science.

[53]  W. Stemmer,et al.  Improved Green Fluorescent Protein by Molecular Evolution Using DNA Shuffling , 1996, Nature Biotechnology.

[54]  R Y Tsien,et al.  Wavelength mutations and posttranslational autoxidation of green fluorescent protein. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[55]  M. Chalfie,et al.  Green fluorescent protein as a marker for gene expression. , 1994, Science.

[56]  W. Lüttke,et al.  Laser dyes III: Concepts to increase the photostability of laser dyes☆ , 1983 .

[57]  W. Luettke,et al.  LASER DYES. II. LASER DYES WITH INTRAMOLECULAR TRIPLET QUENCHING , 1982 .

[58]  F. Schäfer,et al.  Intramolecular TT-energy transfer in bifluorophoric laser dyes , 1982 .

[59]  Bodo Liphardt,et al.  Laser dyes with intramolecular triplet quenching , 1981 .

[60]  J. Saltiel,et al.  The triplet state in stilbene cis-trans photoisomerization , 1975 .

[61]  O. Shimomura,et al.  Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea. , 1962, Journal of cellular and comparative physiology.

[62]  R. Benesch,et al.  Enzymatic removal of oxygen for polarography and related methods. , 1953, Science.

[63]  Kyle A. Barlow,et al.  Design of Light-Controlled Protein Conformations and Functions. , 2016, Methods in molecular biology.

[64]  Eliza M. Warszawik,et al.  Intramolecular photostabilization via triplet-state quenching , 2015 .

[65]  Georgeta Crivat,et al.  Imaging proteins inside cells with fluorescent tags. , 2012, Trends in biotechnology.

[66]  T. Terwilliger,et al.  Engineering and characterization of a superfolder green fluorescent protein , 2006, Nature Biotechnology.

[67]  Byron Ballou,et al.  Noninvasive imaging of quantum dots in mice. , 2004, Bioconjugate chemistry.

[68]  S Falkow,et al.  FACS-optimized mutants of the green fluorescent protein (GFP). , 1996, Gene.

[69]  J. Lakowicz Principles of fluorescence spectroscopy , 1983 .

[70]  S. Monti,et al.  The triplet state of azobenzene , 1981 .