glypy - An open source glycoinformatics library.
暂无分享,去创建一个
[1] Luis Carvalho,et al. Application of network smoothing to glycan LC‐MS profiling , 2018, Bioinform..
[2] Richard D. Cummings,et al. The repertoire of glycan determinants in the human glycome. , 2009, Molecular bioSystems.
[3] Evan Bolton,et al. Symbol Nomenclature for Graphical Representations of Glycans. , 2015, Glycobiology.
[4] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[5] Yaniv Altshuler,et al. Glycoforum a Novel Linear Code ® Nomenclature for Complex Carbohydrates , 2022 .
[6] Sriram Neelamegham,et al. A Computational Framework for the Automated Construction of Glycosylation Reaction Networks , 2014, PloS one.
[7] Joseph Zaia,et al. Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry. , 2016, Analytical chemistry.
[8] María Martín,et al. UniProt: A hub for protein information , 2015 .
[9] The Uniprot Consortium,et al. UniProt: a hub for protein information , 2014, Nucleic Acids Res..
[10] C. Lebrilla,et al. Glycans in the immune system and The Altered Glycan Theory of Autoimmunity: a critical review. , 2015, Journal of autoimmunity.
[11] Lokesh Joshi,et al. The cancer glycome: carbohydrates as mediators of metastasis. , 2015, Blood reviews.
[12] Tatsuya Akutsu,et al. Efficient tree-matching methods for accurate carbohydrate database queries. , 2003, Genome informatics. International Conference on Genome Informatics.
[13] Ajit Varki,et al. Biological roles of glycans , 2016, Glycobiology.
[14] Kiyoko F. Aoki-Kinoshita,et al. GlyTouCan: an accessible glycan structure repository. , 2017, Glycobiology.
[15] Kiyoko F Aoki-Kinoshita,et al. Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database. , 2016, Carbohydrate research.
[16] Kiyoko F. Aoki-Kinoshita,et al. GlyTouCan 1.0 – The international glycan structure repository , 2015, Nucleic Acids Res..
[17] A. McNaught. Nomenclature of carbohydrates (IUPAC Recommendations 1996) , 1996, Advances in carbohydrate chemistry and biochemistry.
[18] Joshua A Klein,et al. Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides * , 2018, Molecular & Cellular Proteomics.
[19] Martin Frank,et al. EUROCarbDB: An open-access platform for glycoinformatics , 2010, Glycobiology.
[20] Hans H Wandall,et al. Global aspects of viral glycosylation , 2018, Glycobiology.
[21] Lev I Levitsky,et al. Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework. , 2018, Journal of proteome research.
[22] Robert J Woods,et al. Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions , 2016, Molecular & Cellular Proteomics.
[23] Kiyoko F. Aoki-Kinoshita. A Practical Guide to Using Glycomics Databases , 2017 .
[24] Portland Press Ltd. IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Nomenclature and symbolism for amino acids and peptides. Recommendations 1983 , 1984 .
[25] Michael Hippler,et al. pymzML v2.0: introducing a highly compressed and seekable gzip format , 2018, Bioinform..
[26] Vassilios Ioannidis,et al. ExPASy: SIB bioinformatics resource portal , 2012, Nucleic Acids Res..
[27] Richard D Cummings,et al. Symbol nomenclature for glycan representation , 2009, Proteomics.
[28] Lars Malmström,et al. pyOpenMS: A Python‐based interface to the OpenMS mass‐spectrometry algorithm library , 2014, Proteomics.
[29] Oliver Horlacher,et al. MzJava: An open source library for mass spectrometry data processing. , 2015, Journal of proteomics.
[30] Y. Mechref,et al. Quantitative Glycomics: A Combined Analytical and Bioinformatics Approach. , 2017, Methods in enzymology.
[31] Hisashi Narimatsu,et al. Toolboxes for a standardised and systematic study of glycans , 2014, BMC Bioinformatics.
[32] Oliver Horlacher,et al. Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search , 2015, PloS one.
[33] Martin Frank,et al. Bioinformatics and molecular modeling in glycobiology , 2010, Cellular and Molecular Life Sciences.
[34] Kiyoko F. Aoki-Kinoshita,et al. WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures , 2017, J. Chem. Inf. Model..
[35] Catherine E Costello,et al. Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides. , 2017, Analytical chemistry.
[36] Richard D Cummings,et al. Protein glycosylation in cancer. , 2015, Annual review of pathology.
[37] Yuri A. Mirokhin,et al. Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk. , 2018, Analytical chemistry.
[38] Ferenc Horkay,et al. Microscale mapping of extracellular matrix elasticity of mouse joint cartilage: an approach to extracting bulk elasticity of soft matter with surface roughness. , 2018, Soft matter.
[39] Sriram Neelamegham,et al. Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data , 2015, Wiley interdisciplinary reviews. Systems biology and medicine.
[40] Philip V. Toukach,et al. GlycoRDF: an ontology to standardize glycomics data in RDF , 2015, Bioinform..
[41] Bartek Wilczynski,et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics , 2009, Bioinform..
[42] Kiyoko F. Aoki-Kinoshita,et al. UniCarbKB: building a knowledge platform for glycoproteomics , 2013, Nucleic Acids Res..
[43] C. Lieth,et al. GlycoCT-a unifying sequence format for carbohydrates. , 2008, Carbohydrate research.