Vascular ligand-receptor mapping by direct combinatorial selection in cancer patients

Molecules differentially expressed in blood vessels among organs or between damaged and normal tissues, are attractive therapy targets; however, their identification within the human vasculature is challenging. Here we screened a peptide library in cancer patients to uncover ligand-receptors common or specific to certain vascular beds. Surveying ∼2.35 × 106 motifs recovered from biopsies yielded a nonrandom distribution, indicating that systemic tissue targeting is feasible. High-throughput analysis by similarity search, protein arrays, and affinity chromatography revealed four native ligand-receptors, three of which were previously unrecognized. Two are shared among multiple tissues (integrin α4/annexin A4 and cathepsin B/apolipoprotein E3) and the other two have a restricted and specific distribution in normal tissue (prohibitin/annexin A2 in white adipose tissue) or cancer (RAGE/leukocyte proteinase-3 in bone metastases). These findings provide vascular molecular markers for biotechnology and medical applications.

[1]  M. Karplus,et al.  Three key residues form a critical contact network in a protein folding transition state , 2001, Nature.

[2]  C. B. Cohen,et al.  Ethics guidelines for research with the recently dead , 2005, Nature Medicine.

[3]  H. Lehrach,et al.  A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.

[4]  Kim-Anh Do,et al.  Steps toward mapping the human vasculature by phage display , 2002, Nature Medicine.

[5]  M. Hemler,et al.  The Pathophysiologic Role of a 4 Integrins In Vivo , 2022 .

[6]  K. Ley,et al.  Role of beta7 integrins in intestinal lymphocyte homing and retention. , 2009, Current molecular medicine.

[7]  R. Frants,et al.  Diet-induced hyperlipoproteinemia and atherosclerosis in apolipoprotein E3-Leiden transgenic mice. , 1994, The Journal of clinical investigation.

[8]  S. Woods,et al.  Peptide Designed to Elicit Apoptosis in Adipose Tissue Endothelium Reduces Food Intake and Body Weight , 2010, Diabetes.

[9]  S. L. Wong,et al.  Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.

[10]  S. Sugawara,et al.  Proinflammatory Cytokines Induce Proteinase 3 as Membrane-Bound and Secretory Forms in Human Oral Epithelial Cells and Antibodies to Proteinase 3 Activate the Cells through Protease-Activated Receptor-21 , 2004, The Journal of Immunology.

[11]  M. Geisow,et al.  The annexin family of calcium-binding proteins. Review article. , 1989, Cell calcium.

[12]  R. Alon,et al.  Integrin modulation and signaling in leukocyte adhesion and migration , 2007, Immunological reviews.

[13]  K. Weisgraber,et al.  Apolipoprotein E structure: insights into function. , 2006, Trends in biochemical sciences.

[14]  G. P. Smith,et al.  Libraries of peptides and proteins displayed on filamentous phage. , 1993, Methods in enzymology.

[15]  J. Folkman Angiogenesis: an organizing principle for drug discovery? , 2007, Nature reviews. Drug discovery.

[16]  C. Logothetis,et al.  Revisiting ethical guidelines for research with terminal wean and brain-dead participants. , 2003, The Hastings Center report.

[17]  W. Arap,et al.  Ligand-directed profiling: applications to target drug discovery in cancer , 2009, Expert opinion on drug discovery.

[18]  Zhaohui S. Qin,et al.  A Global Protein Kinase and Phosphatase Interaction Network in Yeast , 2010, Science.

[19]  P. Troncoso,et al.  Combinatorial Screenings in Patients , 2004, Cancer Research.

[20]  Emmanuel Dias-Neto,et al.  Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis , 2009, PloS one.

[21]  Wadih Arap,et al.  Synchronous selection of homing peptides for multiple tissues by in vivo phage display , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[22]  M. Hemler,et al.  The pathophysiologic role of alpha 4 integrins in vivo. , 1994, The Journal of clinical investigation.

[23]  Y. Fu,et al.  Cloning of cDNA for proteinase 3: a serine protease, antibiotic, and autoantigen from human neutrophils , 1990, The Journal of experimental medicine.

[24]  A. Ridley,et al.  Receptor for advanced glycation end products-binding COOH-terminal motif of amphoterin inhibits invasive migration and metastasis. , 2002, Cancer research.

[25]  Sang J. Chung,et al.  Annexin A4 interacts with the NF-κB p50 subunit and modulates NF-κB transcriptional activity in a Ca2+-dependent manner , 2010, Cellular and Molecular Life Sciences.

[26]  B. Seaton,et al.  Annexin structure and membrane interactions: a molecular perspective. , 1994, Annual review of biophysics and biomolecular structure.

[27]  B. Zetter,et al.  The cellular basis of site-specific tumor metastasis. , 1990, The New England journal of medicine.

[28]  Y. Kubota,et al.  Receptor for advanced glycation end products (RAGE) and its ligand, amphoterin are overexpressed and associated with prostate cancer development , 2005, The Prostate.

[29]  Natasa Przulj,et al.  High-Throughput Mapping of a Dynamic Signaling Network in Mammalian Cells , 2005, Science.

[30]  Jan Paul Medema,et al.  Betulin Is a Potent Anti-Tumor Agent that Is Enhanced by Cholesterol , 2009, PloS one.

[31]  A. Saltiel,et al.  The Stomatin/Prohibitin/Flotillin/HflK/C Domain of Flotillin-1 Contains Distinct Sequences That Direct Plasma Membrane Localization and Protein Interactions in 3T3-L1 Adipocytes* , 2005, Journal of Biological Chemistry.

[32]  M. Schmitz,et al.  Prohibitin and prohibitone are contained in high-molecular weight complexes and interact with alpha-actinin and annexin A2. , 2002, Biochimie.

[33]  Wadih Arap,et al.  Reversal of obesity by targeted ablation of adipose tissue , 2004, Nature Medicine.

[34]  Erkki Ruoslahti,et al.  Organ targeting In vivo using phage display peptide libraries , 1996, Nature.

[35]  K. McCrae,et al.  Annexin A2 mediates endothelial cell activation by antiphospholipid/anti-beta2 glycoprotein I antibodies. , 2005, Blood.

[36]  Mark M. Davis,et al.  Evidence that specific T lymphocytes may participate in the elimination of chronic myelogenous leukemia , 2000, Nature Medicine.

[37]  M. Daemen,et al.  Cathepsin cysteine proteases in cardiovascular disease , 2007, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.