Development of chimeric laccases by directed evolution

DNA recombination methods are useful tools to generate diversity in directed evolution protein engineering studies. We have designed an array of chimeric laccases with high‐redox potential by in vitro and in vivo DNA recombination of two fungal laccases (from Pycnoporus cinnabarinus and PM1 basidiomycete), which were previously tailored by laboratory evolution for functional expression in Saccharomyces cerevisiae. The laccase fusion genes (including the evolved α‐factor prepro‐leaders for secretion in yeast) were subjected to a round of family shuffling to construct chimeric libraries and the best laccase hybrids were identified in dual high‐throughput screening (HTS) assays. Using this approach, we identified chimeras with up to six crossover events in the whole sequence, and we obtained active hybrid laccases with combined characteristics in terms of pH activity and thermostability. Biotechnol. Bioeng. 2012; 109: 2978–2986. © 2012 Wiley Periodicals, Inc.

[1]  Pramod P Wangikar,et al.  Combined sequence and structure analysis of the fungal laccase family , 2003, Biotechnology and bioengineering.

[2]  J. Gordon,et al.  Targeting of proteins into the eukaryotic secretory pathway: Signal peptide structure/function relationships , 1990, BioEssays : news and reviews in molecular, cellular and developmental biology.

[3]  A. Nicolas,et al.  Recombination between similar but not identical DNA sequences during yeast transformation occurs within short stretches of identity , 1992, Cell.

[4]  B. Valderrama,et al.  Evolutionary and structural diversity of fungal laccases , 2004, Antonie van Leeuwenhoek.

[5]  S. Shleev,et al.  “Blue” laccases , 2007, Biochemistry (Moscow).

[6]  S. Shleev,et al.  Altering the laccase functionality by in vivo assembly of mutant libraries with different mutational spectra , 2008, Proteins.

[7]  S. Camarero,et al.  Integrating laccase–mediator treatment into an industrial-type sequence for totally chlorine-free bleaching of eucalypt kraft pulp , 2006 .

[8]  Karen M Polizzi,et al.  Revealing biases inherent in recombination protocols , 2007, BMC biotechnology.

[9]  Toshitsugu Sato,et al.  A chimeric laccase with hybrid properties of the parental Lentinula edodes laccases. , 2010, Microbiological research.

[10]  Ángel T. Martínez,et al.  Laccase detoxification of steam-exploded wheat straw for second generation bioethanol. , 2009, Bioresource technology.

[11]  C D Maranas,et al.  Predicting crossover generation in DNA shuffling , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[12]  D. Pompon,et al.  High efficiency family shuffling based on multi-step PCR and in vivo DNA recombination in yeast: statistical and functional analysis of a combinatorial library between human cytochrome P450 1A1 and 1A2. , 2000, Nucleic acids research.

[13]  H. Claus Laccases: structure, reactions, distribution. , 2004, Micron.

[14]  F. Arnold,et al.  Directed evolution of biocatalysts. , 1999, Current opinion in chemical biology.

[15]  C. Thurston The structure and function of fungal laccases , 1994 .

[16]  E. Meglécz,et al.  Plasticity of laccase generated by homeologous recombination in yeast , 2009, The FEBS journal.

[17]  T. Tzanov,et al.  Decolorization and Detoxification of Textile Dyes with a Laccase from Trametes hirsuta , 2000, Applied and Environmental Microbiology.

[18]  N. Hakulinen,et al.  Essential role of the C‐terminus in Melanocarpus  albomyces laccase for enzyme production, catalytic properties and structure , 2009, The FEBS journal.

[19]  John M Joern,et al.  DNA shuffling. , 2003, Methods in molecular biology.

[20]  Frances H Arnold,et al.  Analysis of shuffled gene libraries. , 2002, Journal of molecular biology.

[21]  Sergey Shleev,et al.  Direct electron transfer between copper-containing proteins and electrodes. , 2005, Biosensors & bioelectronics.

[22]  C. Scorer,et al.  Foreign gene expression in yeast: a review , 1992, Yeast.

[23]  W. Stemmer,et al.  DNA shuffling of a family of genes from diverse species accelerates directed evolution , 1998, Nature.

[24]  F. Arnold,et al.  Methods for in vitro DNA recombination and random chimeragenesis. , 2000, Methods in enzymology.

[25]  F. Arnold,et al.  Optimization of DNA shuffling for high fidelity recombination. , 1997, Nucleic acids research.

[26]  A. Ballesteros,et al.  Laboratory evolution of high-redox potential laccases. , 2010, Chemistry & biology.

[27]  S. Camarero,et al.  Engineering Platforms for Directed Evolution of Laccase from Pycnoporus cinnabarinus , 2011, Applied and Environmental Microbiology.

[28]  F. Armstrong,et al.  Designer laccases: a vogue for high-potential fungal enzymes? , 2010, Trends in biotechnology.

[29]  S. Shleev,et al.  Combinatorial saturation mutagenesis of the Myceliophthora thermophila laccase T2 mutant: the connection between the C-terminal plug and the conserved (509)VSG(511) tripeptide. , 2008, Combinatorial chemistry & high throughput screening.

[30]  W. Stemmer DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. , 1994, Proceedings of the National Academy of Sciences of the United States of America.