Proteomic technologies for prenatal diagnostics: advances and challenges ahead

Proteomics-based identification of biomarkers for fetal abnormalities in maternal plasma, amniotic fluid and reproductive fluids has made significant progress in the past 5 years. This is attributed mainly to advances in various technology platforms associated with mass spectrometry-based techniques. As these techniques are highly sensitive and require only small quantities of body fluids, it is hoped that they will pave the way for the development of effective noninvasive approaches, without subjecting the developing fetus to the same degree of harm as current invasive procedures (e.g., amniocentesis). It is possible that these developments will include same-day analyses, thereby permitting rapid intervention when necessary. To date, a host of body fluids, such as maternal serum and plasma, amniotic fluid, cervical fluid, vaginal fluid, urine, saliva or fetal material, such as placental trophoblast, fetal membranes or cord blood, have been used successfully in the quest to develop markers for a number of pregnancy-related pathologies. In the current review update we focus on the emergence of proteomics as a major platform technology in studying various types of fetal conditions and developing markers for pregnancy-related disorders, such fetal aneuploidy, preterm birth, preeclampsia, intra-amniotic infection and fetal stress. Should the development of these markers be successful, then it is to be envisaged that proteomic approaches will become standard of care for a number of disease conditions associated with feto–maternal health.

[1]  S. Maynard,et al.  Angiogenic factors and preeclampsia. , 2011, Seminars in nephrology.

[2]  G. Saade,et al.  Proteomic profiling of urine identifies specific fragments of SERPINA1 and albumin as biomarkers of preeclampsia. , 2008, American journal of obstetrics and gynecology.

[3]  F. Luft,et al.  Angiogenesis factors and preeclampsia , 2008, Nature Medicine.

[4]  S. Karumanchi,et al.  Advances in the understanding of eclampsia , 2008, Current hypertension reports.

[5]  H. C. Fan,et al.  Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood , 2008, Proceedings of the National Academy of Sciences.

[6]  L. D. White,et al.  Rapid prenatal diagnosis using uncultured amniocytes and oligonucleotide array CGH , 2008, Prenatal diagnosis.

[7]  Harald Mischak,et al.  Urine in Clinical Proteomics* , 2008, Molecular & Cellular Proteomics.

[8]  S. Kjos,et al.  Maternal Lipids as Strong Determinants of Fetal Environment and Growth in Pregnancies With Gestational Diabetes Mellitus , 2008, Diabetes Care.

[9]  B. Huppertz,et al.  Longitudinal Determination of Serum Placental Protein 13 during Development of Preeclampsia , 2008, Fetal Diagnosis and Therapy.

[10]  G. Tsangaris,et al.  Application of proteomics for the identification of differentially expressed protein markers for Down syndrome in maternal plasma , 2008, Prenatal diagnosis.

[11]  Richard M Caprioli,et al.  Imaging mass spectrometry reveals unique protein profiles during embryo implantation. , 2008, Endocrinology.

[12]  Xiaomin Song,et al.  iTRAQ experimental design for plasma biomarker discovery. , 2008, Journal of proteome research.

[13]  D. Mikhailidis,et al.  Association Between Abnormal Uterine Artery Doppler Flow Velocimetry, Risk of Preeclampsia, and Indices of Arterial Structure and Function: A Pilot Study , 2008, Angiology.

[14]  E. Norwitz,et al.  Identification of Proteomic Biomarkers of Preeclampsia in Amniotic Fluid Using SELDI-TOF Mass Spectrometry , 2008, Reproductive Sciences.

[15]  K. Spencer,et al.  Maternal serum ADAM12s in the late first trimester of pregnancies with Trisomy 21 , 2008, Prenatal diagnosis.

[16]  C. Buhimschi,et al.  Multidimensional Proteomics Analysis of Amniotic Fluid to Provide Insight into the Mechanisms of Idiopathic Preterm Birth , 2008, PloS one.

[17]  T. Knudsen,et al.  Fetal alcohol syndrome (FAS) in C57BL/6 mice detected through proteomics screening of the amniotic fluid. , 2008, Birth defects research. Part A, Clinical and molecular teratology.

[18]  F. Malone,et al.  Screening for fetal abnormalities with ultrasound , 2008, Current opinion in obstetrics & gynecology.

[19]  D. Maddocks,et al.  Post-genomics studies and their application to non-invasive prenatal diagnosis. , 2008, Seminars in fetal & neonatal medicine.

[20]  G. Tsangaris,et al.  Proteomic analysis of amniotic fluid in pregnancies with Turner syndrome fetuses. , 2008, Journal of proteome research.

[21]  J. McManaman,et al.  Shotgun Proteomic Analysis of Vaginal Fluid From Women in Late Pregnancy , 2008, Reproductive Sciences.

[22]  R. Redline Placental pathology: a systematic approach with clinical correlations. , 2008, Placenta.

[23]  M. I. Hassan,et al.  Proteomic analysis of human amniotic fluid from Rh− pregnancy , 2008, Prenatal diagnosis.

[24]  C. Salafia,et al.  Using Proteomic Analysis of the Human Amniotic Fluid to Identify Histologic Chorioamnionitis , 2008, Obstetrics and gynecology.

[25]  F. Xing,et al.  [Proteomics of follicular fluid in mature human follicles and antral follicles: a comparative study with laser desorption/ionization-time of flight-mass spectrometry]. , 2008, Nan fang yi ke da xue xue bao = Journal of Southern Medical University.

[26]  J. Bergquist,et al.  Proteomic analysis of human follicular fluid using an alternative bottom-up approach. , 2008, Journal of proteome research.

[27]  F. Petraglia,et al.  Inhibins as diagnostic markers in human reproduction. , 2008, Advances in clinical chemistry.

[28]  J. Solassol,et al.  Proteomic profile determination of autosomal aneuploidies by mass spectrometry on amniotic fluids , 2008, Proteome Science.

[29]  J. Yeast,et al.  Biochemical markers for the prediction of preterm delivery. , 2007, Clinics in perinatology.

[30]  T. Hampton Comprehensive "proteomic profile" of amniotic fluid may aid prenatal diagnosis. , 2007, JAMA.

[31]  Sean L Seymour,et al.  The Paragon Algorithm, a Next Generation Search Engine That Uses Sequence Temperature Values and Feature Probabilities to Identify Peptides from Tandem Mass Spectra*S , 2007, Molecular & Cellular Proteomics.

[32]  Stephen R Quake,et al.  Detection of aneuploidy with digital polymerase chain reaction. , 2007, Analytical chemistry.

[33]  Tak Y. Leung,et al.  Digital PCR for the molecular detection of fetal chromosomal aneuploidy , 2007, Proceedings of the National Academy of Sciences.

[34]  U. Knudsen,et al.  Pre‐symptomatic increase in urine‐orosomucoid excretion in pre‐eclamptic women , 2007, Acta obstetricia et gynecologica Scandinavica.

[35]  E. Diamandis,et al.  Proteomics Analysis of Human Amniotic Fluid *S , 2007, Molecular & Cellular Proteomics.

[36]  R. Levine,et al.  Sequential Changes in Antiangiogenic Factors in Early Pregnancy and Risk of Developing Preeclampsia , 2007 .

[37]  E. Diamandis,et al.  Proteomic analysis of human cervico-vaginal fluid. , 2007, Journal of proteome research.

[38]  J. Deprest,et al.  Proteomic analyses of amniotic fluid: potential applications in health and diseases. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[39]  M. Mohaupt Molecular aspects of preeclampsia. , 2007, Molecular aspects of medicine.

[40]  Leonardo Pereira,et al.  Comprehensive proteomic analysis of the human amniotic fluid proteome: gestational age-dependent changes. , 2007, Journal of proteome research.

[41]  Mary E D'Alton,et al.  Proteomic analysis of maternal serum in down syndrome: identification of novel protein biomarkers. , 2007, Journal of proteome research.

[42]  S. Dasari,et al.  Identification of novel protein biomarkers of preterm birth in human cervical-vaginal fluid. , 2007, Journal of proteome research.

[43]  G. Mizejewski,et al.  Maternal Serum Transformed α-Fetoprotein Levels in Women with Intrauterine Growth Retardation , 2007, Fetal Diagnosis and Therapy.

[44]  C. Pettker,et al.  Value of Placental Microbial Evaluation in Diagnosing Intra-amniotic Infection , 2007, Obstetrics and gynecology.

[45]  V. Bhandari,et al.  Proteomic Biomarkers of Intra-amniotic Inflammation: Relationship with Funisitis and Early-onset Sepsis in the Premature Neonate , 2007, Pediatric Research.

[46]  K. Spencer Aneuploidy screening in the first trimester , 2007, American journal of medical genetics. Part C, Seminars in medical genetics.

[47]  G. Rice,et al.  Proteomic analysis and characterisation of human cervico‐vaginal fluid proteins , 2007, The Australian & New Zealand journal of obstetrics & gynaecology.

[48]  J. Copel,et al.  Proteomics: a novel methodology to complement prenatal diagnosis of chromosomal abnormalities and inherited human diseases. , 2007, American journal of perinatology.

[49]  W. De,et al.  Proteomic Analysis of Proteins Differentially Expressed in Preeclamptic Trophoblasts , 2007, Gynecologic and Obstetric Investigation.

[50]  K. Spencer,et al.  ADAM12 as a marker of trisomy 18 in the first and second trimester of pregnancy , 2007, The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians.

[51]  S. Dasari,et al.  Comprehensive proteomic analysis of human cervical-vaginal fluid. , 2007, Journal of proteome research.

[52]  R. Levine,et al.  Sequential changes in antiangiogenic factors in early pregnancy and risk of developing preeclampsia. , 2006, Hypertension.

[53]  Tjoa Ml,et al.  Angiogenic factors and preeclampsia. , 2007 .

[54]  He-feng Huang,et al.  Specific peptide patterns of follicular fluids at different growth stages analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. , 2007, Biochimica et biophysica acta.

[55]  Leonardo Pereira,et al.  Proteomic analysis of cervical-vaginal fluid: identification of novel biomarkers for detection of intra-amniotic infection. , 2007, Journal of proteome research.

[56]  A. Scaloni,et al.  Oxidized transthyretin in amniotic fluid as an early marker of preeclampsia. , 2007, Journal of proteome research.

[57]  Tsuyoshi Saito,et al.  Proteomic analysis of mechanisms of hypoxia-induced apoptosis in trophoblastic cells , 2006, International journal of medical sciences.

[58]  Matthias Mann,et al.  Innovations: Functional and quantitative proteomics using SILAC , 2006, Nature Reviews Molecular Cell Biology.

[59]  Hao Yang,et al.  A Simple Parallel Analytical Method of Prenatal Screening , 2006, Gynecologic and Obstetric Investigation.

[60]  C. di Ilio,et al.  Proteome analysis of human follicular fluid. , 2006, Biochimica et biophysica acta.

[61]  B. Győrffy,et al.  Use of routinely collected amniotic fluid for whole-genome expression analysis of polygenic disorders. , 2006, Clinical chemistry.

[62]  He-feng Huang,et al.  Proteomic Analysis on the Alteration of Protein Expression in the Placental Villous Tissue of Early Pregnancy Loss , 2006, Biology of reproduction.

[63]  H. Cuckle,et al.  Maternal serum ADAM12 levels in Down and Edwards' syndrome pregnancies at 9–12 weeks' gestation , 2006, Prenatal diagnosis.

[64]  G. Tsangaris,et al.  Proteomic analysis of amniotic fluid in pregnancies with Down syndrome , 2006, Proteomics.

[65]  G. Tsangaris,et al.  The normal human amniotic fluid supernatant proteome. , 2006, In vivo.

[66]  L. Matrisian,et al.  Salivary proteinase activity: a potential biomarker for preterm premature rupture of the membranes. , 2006, American journal of obstetrics and gynecology.

[67]  K. Baek,et al.  Proteomic analysis of recurrent spontaneous abortion: Identification of an inadequately expressed set of proteins in human follicular fluid , 2006, Proteomics.

[68]  Gilbert S Omenn,et al.  Differential protein expression profiling by iTRAQ-2DLC-MS/MS of lung cancer cells undergoing epithelial-mesenchymal transition reveals a migratory/invasive phenotype. , 2006, Journal of proteome research.

[69]  J. Rossier,et al.  Proteome analysis of human plasma and amniotic fluid by Off‐Gel™ isoelectric focusing followed by nano‐LC‐MS/MS , 2006, Electrophoresis.

[70]  Guanghui Wang,et al.  Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF. , 2006, Journal of Proteome Research.

[71]  M. Gravett,et al.  Amniocentesis results and novel proteomic analysis in a case of occult candidal chorioamnionitis , 2006, The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians.

[72]  S. Oh,et al.  Proteome analysis of human amnion and amniotic fluid by two‐dimensional electrophoresis and matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry , 2006, Proteomics.

[73]  R. Iozzo,et al.  The role of proteomics in the assessment of premature rupture of fetal membranes. , 2005, Clinica chimica acta; international journal of clinical chemistry.

[74]  Henrik Zetterberg,et al.  Proteomic analysis using protein chips to detect biomarkers in cervical and amniotic fluid in women with intra-amniotic inflammation. , 2005, Journal of proteome research.

[75]  J. Canick,et al.  Second trimester serum markers. , 2005, Seminars in perinatology.

[76]  K. Nicolaides First-trimester screening for chromosomal abnormalities. , 2005, Seminars in perinatology.

[77]  The Effect of Maternal Asthma on Placental and Cord Blood Protein Profiles , 2005, The Journal of the Society for Gynecologic Investigation: JSGI.

[78]  Tzu-Hao Wang,et al.  Rapid detection of fetal aneuploidy using proteomics approaches on amniotic fluid supernatant , 2005, Prenatal diagnosis.

[79]  I. Sargent,et al.  Latest Advances in Understanding Preeclampsia , 2005, Science.

[80]  K. Nicolaides,et al.  Second‐trimester levels of pregnancy‐associated plasma protein‐A and free β‐hCG in pregnancies with trisomy 13 , 2005, Prenatal diagnosis.

[81]  W. Gilbert,et al.  Amniotic Fluid: Not Just Fetal Urine Anymore , 2005, Journal of Perinatology.

[82]  Harold R. Garner,et al.  Evidence for the regulation of alternative splicing via complementary DNA sequence repeats , 2005, Bioinform..

[83]  T. Colgan,et al.  Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and cICAT with multidimensional liquid chromatography and tandem mass spectrometry. , 2005, Journal of proteome research.

[84]  G. Tsangaris,et al.  The amniotic fluid cell proteome , 2005, Electrophoresis.

[85]  J. Ordovás,et al.  Global gene expression analysis of the living human fetus using cell-free messenger RNA in amniotic fluid. , 2005, JAMA.

[86]  C. Buhimschi,et al.  Proteomic biomarker analysis of amniotic fluid for identification of intra‐amniotic inflammation , 2005, BJOG : an international journal of obstetrics and gynaecology.

[87]  T. Luider,et al.  Peptide patterns of laser dissected human trophoblasts analyzed by matrix‐assisted laser desorption/ionisation‐time of flight mass spectrometry , 2005, Proteomics.

[88]  K. Parker,et al.  Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.

[89]  H. Griffiths,et al.  The use of proteomics for the assessment of clinical samples in research. , 2004, Clinical biochemistry.

[90]  K. Nicolaides Nuchal translucency and other first-trimester sonographic markers of chromosomal abnormalities. , 2004, American journal of obstetrics and gynecology.

[91]  P. Bryant-Greenwood,et al.  Post-genome molecular diagnostics in obstetrics , 2004, Current opinion in obstetrics & gynecology.

[92]  T. Veenstra,et al.  The Human Plasma Proteome , 2004, Molecular & Cellular Proteomics.

[93]  T. Arinami,et al.  Proteome analysis reveals elevated serum levels of clusterin in patients with preeclampsia , 2004, Proteomics.

[94]  G. Mires,et al.  Use of proteomic patterns as a novel screening tool in pre-eclampsia , 2004, Journal of obstetrics and gynaecology : the journal of the Institute of Obstetrics and Gynaecology.

[95]  Qing‐Yu He,et al.  Proteomic technology and its biomedical applications. , 2003, Sheng wu hua xue yu sheng wu wu li xue bao Acta biochimica et biophysica Sinica.

[96]  B. Dastugue,et al.  Identification of biologic markers of the premature rupture of fetal membranes: Proteomic approach , 2003, Proteomics.

[97]  M. Mann,et al.  Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* , 2002, Molecular & Cellular Proteomics.

[98]  C. Kemp,et al.  Placental peptides as markers of gestational disease. , 2002, Reproduction.

[99]  E. Petricoin,et al.  Use of proteomic patterns in serum to identify ovarian cancer , 2002, The Lancet.

[100]  H. Cuckle Time for total shift to first-trimester screening for Down's syndrome , 2001, The Lancet.

[101]  E. Petricoin,et al.  Clinical proteomics: personalized molecular medicine. , 2001, JAMA.

[102]  S. Gygi,et al.  Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.

[103]  G. Mizejewski β-Fetoprotein as a Biologic Response Modifier: Relevance to Domain and Subdomain Structure , 1997, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.

[104]  T. Moore Clinical assessment of amniotic fluid. , 1997, Clinical obstetrics and gynecology.

[105]  A. Mcguire,et al.  Antenatal screening for Down's syndrome. , 1992, Journal of medical screening.

[106]  Filipponi,et al.  Evidence for , 1996, Physical review. B, Condensed matter.

[107]  M. Wilkins,et al.  Progress with gene‐product mapping of the Mollicutes: Mycoplasma genitalium , 1995, Electrophoresis.

[108]  A. Mcguire,et al.  Antenatal Screening for Down's Syndrome , 1997, Journal of medical screening.

[109]  A. Hackshaw,et al.  Antenatal screening for Downs syndrome , 1993 .

[110]  R. Wenk,et al.  Amniotic fluid and advances in prenatal diagnosis. , 1985, Clinics in laboratory medicine.

[111]  D. Brock,et al.  MATERNAL PLASMA ALPHA‐FETOPROTEIN SCREENING FOR FETAL NEURAL TUBE DEFECTS , 1978, British journal of obstetrics and gynaecology.