Long Noncoding RNAs with Enhancer-like Function in Human Cells

[1]  H. Lipkin.  Where is the ?c? , 1978 .

[2]  J. Banerji,et al.  Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. , 1981, Cell.

[3]  J. Banerji,et al.  Expression of a β-globin gene is enhanced by remote SV40 DNA sequences , 1981, Cell.

[4]  P. Gruss,et al.  Enhancer elements , 1983, Cell.

[5]  J. Banerji,et al.  A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes , 1983, Cell.

[6]  S. Tonegawa,et al.  A tissue-specific transcription enhancer element is located in the major intron of a rearranged immunoglobulin heavy chain gene , 1983, Cell.

[7]  J. Nevins,et al.  Adenovirus 5 E2 transcription unit: an E1A-inducible promoter with an essential element that functions independently of position or orientation , 1984, Molecular and cellular biology.

[8]  V. Ambros,et al.  The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 , 1993, Cell.

[9]  G. Ruvkun,et al.  Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans , 1993, Cell.

[10]  D. Tuan,et al.  Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene , 1997, Molecular and cellular biology.

[11]  A. Fire,et al.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans , 1998, Nature.

[12]  Neil J McKenna,et al.  A Steroid Receptor Coactivator, SRA, Functions as an RNA and Is Present in an SRC-1 Complex , 1999, Cell.

[13]  R. Guigó,et al.  GeneID in Drosophila. , 2000, Genome research.

[14]  P. Savagner,et al.  Leaving the neighborhood: molecular mechanisms involved during epithelial‐mesenchymal transition , 2001, BioEssays : news and reviews in molecular, cellular and developmental biology.

[15]  David M. Livingston,et al.  A Complex with Chromatin Modifiers That Occupies E2F- and Myc-Responsive Genes in G0 Cells , 2002, Science.

[16]  M. Nieto,et al.  The snail superfamily of zinc-finger transcription factors , 2002, Nature Reviews Molecular Cell Biology.

[17]  T. Hoang,et al.  SCL: from the origin of hematopoiesis to stem cells and leukemia. , 2004, Experimental hematology.

[18]  Thomas E. Royce,et al.  Global Identification of Human Transcribed Sequences with Genome Tiling Arrays , 2004, Science.

[19]  G. Berx,et al.  The transcription factor snail induces tumor cell invasion through modulation of the epithelial cell differentiation program. , 2005, Cancer research.

[20]  Eugene Berezikov,et al.  Camels and zebrafish, viruses and cancer: a microRNA update. , 2005, Human molecular genetics.

[21]  M. Nieto,et al.  The Snail genes as inducers of cell movement and survival: implications in development and cancer , 2005, Development.

[22]  G. Helt,et al.  Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution , 2005, Science.

[23]  Chris P. Ponting,et al.  Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model , 2005, PLoS Comput. Biol..

[24]  J. Harrow,et al.  GENCODE: producing a reference annotation for ENCODE , 2006, Genome Biology.

[25]  Brian S. Clark,et al.  The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. , 2006, Genes & development.

[26]  C. Disteche,et al.  Dosage compensation in mammals: fine-tuning the expression of the X chromosome. , 2006, Genes & development.

[27]  E. Kandel,et al.  RNA-mediated response to heat shock in mammalian cells , 2006, Nature.

[28]  M. Kuroda,et al.  Noncoding RNAs and Intranuclear Positioning in Monoallelic Gene Expression , 2007, Cell.

[29]  William Stafford Noble,et al.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.

[30]  Charlotte N. Henrichsen,et al.  Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. , 2007, Genome research.

[31]  P. Stadler,et al.  RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription , 2007, Science.

[32]  Dustin E. Schones,et al.  High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.

[33]  Enrique Blanco,et al.  Using geneid to Identify Genes , 2002, Current protocols in bioinformatics.

[34]  Howard Y. Chang,et al.  Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs , 2007, Cell.

[35]  Yijun Ruan,et al.  Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies. , 2007, Genome research.

[36]  Eric T. Wang,et al.  Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.

[37]  Daniel J. Hoeppner,et al.  Global transcription in pluripotent embryonic stem cells. , 2008, Cell stem cell.

[38]  Mikkel H. Schierup,et al.  RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters , 2008, Science.

[39]  Leighton J. Core,et al.  Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters , 2008, Science.

[40]  Gene W. Yeo,et al.  Divergent Transcription from Active Promoters , 2008, Science.

[41]  E. Sontheimer,et al.  Origins and Mechanisms of miRNAs and siRNAs , 2009, Cell.

[42]  Lin Zhang,et al.  KLF17 is a negative regulator of epithelial–mesenchymal transition and metastasis in breast cancer , 2009, Nature Cell Biology.

[43]  J. Rinn,et al.  Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression , 2009, Proceedings of the National Academy of Sciences.

[44]  J. Mattick.  The Genetic Signatures of Noncoding RNAs , 2009, PLoS genetics.

[45]  R. Sachidanandam,et al.  Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs , 2009, Nature.

[46]  C. Ponting,et al.  Evolution and Functions of Long Noncoding RNAs , 2009, Cell.

[47]  Michael F. Lin,et al.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.

[48]  Nathaniel D. Heintzman,et al.  Histone modifications at human enhancers reflect global cell-type-specific gene expression , 2009, Nature.

[49]  G. Kreiman,et al.  Widespread transcription at neuronal activity-regulated enhancers , 2010, Nature.