Federated Simulation for Medical Imaging

Labelling data is expensive and time consuming especially for domains such as medical imaging that contain volumetric imaging data and require expert knowledge. Exploiting a larger pool of labeled data available across multiple centers, such as in federated learning, has also seen limited success since current deep learning approaches do not generalize well to images acquired with scanners from different manufacturers. We aim to address these problems in a common, learning-based image simulation framework which we refer to as Federated Simulation. We introduce a physics-driven generative approach that consists of two learnable neural modules: 1) a module that synthesizes 3D cardiac shapes along with their materials, and 2) a CT simulator that renders these into realistic 3D CT Volumes, with annotations. Since the model of geometry and material is disentangled from the imaging sensor, it can effectively be trained across multiple medical centers. We show that our data synthesis framework improves the downstream segmentation performance on several datasets.

[1]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[2]  Patrick Pérez,et al.  Poisson image editing , 2003, ACM Trans. Graph..

[3]  Rui Liao,et al.  Unsupervised X-ray image segmentation with task driven generative adversarial networks , 2020, Medical Image Anal..

[4]  Nassir Navab,et al.  DeepDRR - A Catalyst for Machine Learning in Fluoroscopy-guided Procedures , 2018, MICCAI.

[5]  Alejandro F. Frangi,et al.  Generalised Coherent Point Drift for Group-Wise Registration of Multi-dimensional Point Sets , 2017, MICCAI.

[6]  Thomas Brox,et al.  3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation , 2016, MICCAI.

[7]  Claudia Clopath,et al.  Image Synthesis with a Convolutional Capsule Generative Adversarial Network , 2018, MIDL.

[8]  Sanja Fidler,et al.  Meta-Sim: Learning to Generate Synthetic Datasets , 2019, 2019 IEEE/CVF International Conference on Computer Vision (ICCV).

[9]  Jian Zhuang,et al.  Whole Heart and Great Vessel Segmentation in Congenital Heart Disease Using Deep Neural Networks and Graph Matching , 2019, MICCAI.

[10]  Andreas K. Maier,et al.  PYRO-NN: Python Reconstruction Operators in Neural Networks , 2019, Medical physics.

[11]  Blaise Agüera y Arcas,et al.  Communication-Efficient Learning of Deep Networks from Decentralized Data , 2016, AISTATS.

[12]  Taesung Park,et al.  Semantic Image Synthesis With Spatially-Adaptive Normalization , 2019, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[13]  Xiahai Zhuang,et al.  Multi-scale patch and multi-modality atlases for whole heart segmentation of MRI , 2016, Medical Image Anal..

[14]  Mathias Unberath,et al.  Open-source 4D statistical shape model of the heart for x-ray projection imaging , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[15]  Li Fei-Fei,et al.  Perceptual Losses for Real-Time Style Transfer and Super-Resolution , 2016, ECCV.