Bacterial chromatin: converging views at different scales.
暂无分享,去创建一个
[1] S. Rosenberg,et al. Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli , 2015, Genetics.
[2] S. Gruber. Multilayer chromosome organization through DNA bending, bridging and extrusion. , 2014, Current opinion in microbiology.
[3] D. Rudner,et al. Recruitment of SMC by ParB-parS Organizes the Origin Region and Promotes Efficient Chromosome Segregation , 2009, Cell.
[4] Jeffrey R Moffitt,et al. Characterization and development of photoactivatable fluorescent proteins for single-molecule–based superresolution imaging , 2014, Proceedings of the National Academy of Sciences.
[5] Nora Goosen,et al. The regulation of transcription initiation by integration host factor , 1995, Molecular microbiology.
[6] Cees Dekker,et al. Dual architectural roles of HU: formation of flexible hinges and rigid filaments. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[7] Nicholas M. Luscombe,et al. Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12 , 2011, Nucleic acids research.
[8] R. S. Grand,et al. Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription , 2013, Nucleic acids research.
[9] J. Roth,et al. Surveying a supercoil domain by using the gamma delta resolution system in Salmonella typhimurium , 1996, Journal of bacteriology.
[10] Gijs J. L. Wuite,et al. Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation , 2006, Nature.
[11] H. McAdams,et al. Compaction and transport properties of newly replicated Caulobacter crescentus DNA , 2011, Molecular microbiology.
[12] T. Hirano. At the heart of the chromosome: SMC proteins in action , 2006, Nature Reviews Molecular Cell Biology.
[13] J. Vreede,et al. Genomic Looping: A Key Principle of Chromatin Organization , 2015, Journal of Molecular Microbiology and Biotechnology.
[14] Martijn S Luijsterburg,et al. The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective. , 2006, Journal of structural biology.
[15] Michael A Thompson,et al. Super-resolution imaging of the nucleoid-associated protein HU in Caulobacter crescentus. , 2011, Biophysical journal.
[16] Charles J. Dorman,et al. Genome architecture and global gene regulation in bacteria: making progress towards a unified model? , 2013, Nature Reviews Microbiology.
[17] R. Stein,et al. Measuring chromosome dynamics on different time scales using resolvases with varying half‐lives , 2005, Molecular microbiology.
[18] R. T. Dame,et al. The role of nucleoid‐associated proteins in the organization and compaction of bacterial chromatin , 2005, Molecular microbiology.
[19] Nicholas M. Luscombe,et al. Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli , 2010, Nucleic acids research.
[20] J. Dekker,et al. Capturing Chromosome Conformation , 2002, Science.
[21] T. Oshima,et al. H-NS promotes looped domain formation in the bacterial chromosome , 2007, Current Biology.
[22] J. Loparo,et al. Multistep assembly of DNA condensation clusters by SMC , 2016, Nature Communications.
[23] Cherisse R. Loucks,et al. Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria , 2011, Science.
[24] Yipeng Wang,et al. Selective Silencing of Foreign DNA with Low GC Content by the H-NS Protein in Salmonella , 2006, Science.
[25] R. C. Johnson,et al. The Fis protein: it's not just for DNA inversion anymore , 1992, Molecular microbiology.
[26] W. E. Moerner,et al. Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging , 2013, Nature Reviews Microbiology.
[27] Nancy Kleckner,et al. Four-Dimensional Imaging of E. coli Nucleoid Organization and Dynamics in Living Cells , 2013, Cell.
[28] F. Boccard,et al. Spatial arrangement and macrodomain organization of bacterial chromosomes , 2005, Molecular microbiology.
[29] A. Grossman,et al. The Transcriptional Regulator Rok Binds A+T-Rich DNA and Is Involved in Repression of a Mobile Genetic Element in Bacillus subtilis , 2010, PLoS genetics.
[30] C. D. Hardy,et al. Topological domain structure of the Escherichia coli chromosome. , 2004, Genes & development.
[31] Reid C. Johnson,et al. Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes. , 2004, Biochemistry.
[32] F. Sobott,et al. Specific and non-specific interactions of ParB with DNA: implications for chromosome segregation , 2015, Nucleic acids research.
[33] M. Nollmann,et al. Stochastic Self-Assembly of ParB Proteins Builds the Bacterial DNA Segregation Apparatus. , 2015, Cell systems.
[34] Y. Lyubchenko,et al. Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteria , 2015, eLife.
[35] C. Wyman,et al. H-NS mediated compaction of DNA visualised by atomic force microscopy. , 2000, Nucleic acids research.
[36] J. Errington,et al. Recruitment of Condensin to Replication Origin Regions by ParB/SpoOJ Promotes Chromosome Segregation in B. subtilis , 2009, Cell.
[37] L. Mirny,et al. High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome , 2013, Science.
[38] Naotake Ogasawara,et al. Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. , 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.
[39] David C. Grainger,et al. Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria , 2011, PLoS genetics.
[40] H. Ingmer,et al. H‐NS: a modulator of environmentally regulated gene expression , 1997, Molecular microbiology.
[41] Ben Lehner,et al. Nucleoid-Associated Proteins Affect Mutation Dynamics in E. coli in a Growth Phase-Specific Manner , 2012, PLoS Comput. Biol..
[42] Romain Koszul,et al. Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging. , 2015, Molecular cell.
[43] C. D. Hardy,et al. A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure , 2005, Molecular microbiology.
[44] S. Ben-Yehuda,et al. Spatial organization of a replicating bacterial chromosome , 2008, Proceedings of the National Academy of Sciences.
[45] Reid C. Johnson,et al. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions , 2012, Molecular microbiology.
[46] M. Rossignol,et al. Macrodomain organization of the Escherichia coli chromosome , 2004, The EMBO journal.
[47] B. Steensel,et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C) , 2006, Nature Genetics.
[48] S. Ueda,et al. Growth Phase-Dependent Variation in Protein Composition of the Escherichia coli Nucleoid , 1999, Journal of bacteriology.
[49] M. Kivisaar,et al. Homologous recombination is facilitated in starving populations of Pseudomonas putida by phenol stress and affected by chromosomal location of the recombination target. , 2012, Mutation research.
[50] S. Busby,et al. Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome , 2006, Nucleic acids research.
[51] Marc A. Martí-Renom,et al. The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation , 2012, RECOMB.
[52] C. Broedersz,et al. Condensation and localization of the partitioning protein ParB on the bacterial chromosome , 2014, Proceedings of the National Academy of Sciences.
[53] R. Hurme,et al. Temperature sensing in bacterial gene regulation — what it all boils down to , 1998, Molecular microbiology.
[54] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[55] J. Loparo,et al. Building bridges within the bacterial chromosome. , 2015, Trends in genetics : TIG.
[56] Carla Coltharp,et al. Superresolution microscopy for microbiology , 2012, Cellular microbiology.
[57] Shane C. Dillon,et al. Bacterial nucleoid-associated proteins, nucleoid structure and gene expression , 2010, Nature Reviews Microbiology.
[58] Jie Yan,et al. H-NS Regulates Gene Expression and Compacts the Nucleoid: Insights from Single-Molecule Experiments. , 2015, Biophysical journal.
[59] Job Dekker,et al. Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis , 2015, Genes & development.